Gene Card
Gene overview
cDNA / CDS / Protein Sequences
846 bp · LXL04_028353|LXL04_028353|OH1004|cDNA
ATGTCATACAGCGAACGGGACACCGTCCCCCTCAACCAGTCCTCTCAATCCGACATCGATGAGATCGAAAACCTAATCAACTACAGCGTCCAATCCGGTCCTGCCACTGTTCTCCCCGCCCGTCCACCATCTCCTCCACGAGCTTCCATTCCCGTATCTTCCTCCCCCTTCATCGCCTCCAACCTTCCTCCGCCTCCTCAGAAACCGGCATCTGTCCCTGCAGCACCTCCACCGCCTTCTAACCAGAACCGTAATGCTAA...
846 bp · LXL04_028353|LXL04_028353|OH1004|CDS
ATGTCATACAGCGAACGGGACACCGTCCCCCTCAACCAGTCCTCTCAATCCGACATCGATGAGATCGAAAACCTAATCAACTACAGCGTCCAATCCGGTCCTGCCACTGTTCTCCCCGCCCGTCCACCATCTCCTCCACGAGCTTCCATTCCCGTATCTTCCTCCCCCTTCATCGCCTCCAACCTTCCTCCGCCTCCTCAGAAACCGGCATCTGTCCCTGCAGCACCTCCACCGCCTTCTAACCAGAACCGTAATGCTAA...
Protein
Download Protein FASTA281 aa · LXL04_028353|LXL04_028353|OH1004|PROTEIN
MSYSERDTVPLNQSSQSDIDEIENLINYSVQSGPATVLPARPPSPPRASIPVSSSPFIASNLPPPPQKPASVPAAPPPPSNQNRNANVGTNGQQSGMTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLATGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVILKIVVVCVTLAWSSWAAYPFISMAVNPRRKA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028353 |
|---|---|
| TK1151 ID | TkA07G145700 |
| OH-1004 ID | LXL04_028353 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028353 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:38780740-38783840 (+) | |||||||||
| Description | Similar to yipf6: Protein YIPF6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0015031 protein transport Biological Process GO:0015774 polysaccharide transport Biological Process GO:0045489 pectin biosynthetic process Biological Process GO:0048364 root development Biological Process GO:0048766 root hair initiation Biological Process GO:0051223 regulation of protein transport Biological Process GO:0052324 plant-type cell wall cellulose biosynthetic process Biological Process GO:0099402 plant organ development Biological Process GO:0000138 Golgi trans cisterna Cellular Component GO:0000139 Golgi membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G18840 ath:AT4G30260 ddi:DDB_G0282825 rno:363476 xtr:548686 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04893.23Yip1142-275 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028353 | PF04893.23 | Yip1 | 142 | 275 | 6.1e-15 | 56.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.