LXL04_028346 | RubberDandelionOmics

Gene overview

LXL04_028346

Reference: OH-1004 Chr: Chr06 Coordinates: 38634017-38634448 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

432 bp · LXL04_028346|LXL04_028346|OH1004|cDNA

ATGAGTTCCTTCAATCTACACCGACCAGAAAATGAGCACACCATGGACCTCAACTCATCTTCTTCGCCATTGTTGTCCTCTTTACACCATGCGGACCAACGGGTCTTCTCCTGCAGCTATTGCAGGAGAAAGTTCTACAGCCCTCAAGCATTCGGAGGCCACCAAAATGCTCACAAGCTTGAAAGAACCTTAGCTAAGAAAAGCCGAGAGCTATGCTCGGCTGCTAGACATCATCAATCTGAATGGAACCTGCAACTGTC...

CDS

Download CDS FASTA

432 bp · LXL04_028346|LXL04_028346|OH1004|CDS

ATGAGTTCCTTCAATCTACACCGACCAGAAAATGAGCACACCATGGACCTCAACTCATCTTCTTCGCCATTGTTGTCCTCTTTACACCATGCGGACCAACGGGTCTTCTCCTGCAGCTATTGCAGGAGAAAGTTCTACAGCCCTCAAGCATTCGGAGGCCACCAAAATGCTCACAAGCTTGAAAGAACCTTAGCTAAGAAAAGCCGAGAGCTATGCTCGGCTGCTAGACATCATCAATCTGAATGGAACCTGCAACTGTC...

Protein

Download Protein FASTA

143 aa · LXL04_028346|LXL04_028346|OH1004|PROTEIN

MSSFNLHRPENEHTMDLNSSSSPLLSSLHHADQRVFSCSYCRRKFYSPQAFGGHQNAHKLERTLAKKSRELCSAARHHQSEWNLQLSSRFDCNGSAHVGEVQPANMVMGLEHHQERLVRFSSTERRREVGESSVDQLDLSLRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028346`
TK1151 ID	TkA07G145370
OH-1004 ID	LXL04_028346
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 90.210 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028346

Location Chr06:38634017-38634448 (+)

Description Similar to ZFP2: Zinc finger protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57520`	Transcription factor involved in the regulation of floral organ abscission and required for seed and silique development.	Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2.2008 · DOI: 10.1104/pp.107.110908 ZINC FINGER PROTEIN2 suppresses funiculus lignification to ensure seed loading efficiency in Arabidopsis.2025 · DOI: 10.1016/j.devcel.2025.01.021
`At1g24625`	Acts as a negative regulator of abscisic acid (ABA) signaling during germination and early seedling development.	The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.2014 · DOI: 10.1104/pp.113.234294
`At1g80730`	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable).	The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.2014 · DOI: 10.1104/pp.113.234294 Expression analysis of an Arabidopsis C2H2 zinc finger protein gene.1996 · DOI: 10.1007/bf00020477
`At5g25160`	Acts as a negative regulator of abscisic acid (ABA) signaling during germination and early seedling development.	The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.2014 · DOI: 10.1104/pp.113.234294
`At1g66140`	Acts as a negative regulator of abscisic acid (ABA) signaling during germination and early seedling development.	The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.2014 · DOI: 10.1104/pp.113.234294

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0060860 regulation of floral organ abscission Biological Process

GO:0060862 negative regulation of floral organ abscission Biological Process

GO:0080050 regulation of seed development Biological Process

GO:1901347 negative regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G24625

ath:AT1G66140

ath:AT1G80730

ath:AT5G25160

ath:AT5G57520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · LXL04_028346 · OH-1004

Cytoplasm0.110

Rank 2 · LXL04_028346 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_028346 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_028346 · OH-1004

Plastid0.009

Rank 5 · LXL04_028346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39261`	Arabidopsis thaliana	Zinc finger protein 2	46.552%	Swiss-Prot	moderate database homology
`Q39266`	Arabidopsis thaliana	Zinc finger protein 7	45.455%	Swiss-Prot	moderate database homology
`Q42485`	Arabidopsis thaliana	Zinc finger protein 1	76.923%	Swiss-Prot	weak database homology
`Q39262`	Arabidopsis thaliana	Zinc finger protein 3	49.153%	Swiss-Prot	weak database homology
`Q39263`	Arabidopsis thaliana	Zinc finger protein 4	67.442%	Swiss-Prot	weak database homology

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