LXL04_028152 | RubberDandelionOmics

Gene overview

LXL04_028152

Reference: OH-1004 Chr: Chr06 Coordinates: 32605823-32606896 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1074 bp · LXL04_028152|LXL04_028152|OH1004|cDNA

ATGGGGAAGACGACCAAATGGATCAAGAATTTGCTGGCCGGAAAGAAAGACAGAACCAACAACCAGCCACGAATCGCCACCCAAGATCGTAACCCACTAACCCCCATCTCCACCCATCCCACAACTCCCAAAGAGAAGAGCAGATGGAGCTTCCGGCGATCATCCGCCACCTCCACCACCCCTCCCAACTTCACCACCATTGCATCGACTACACCCACCTCTTTCCAACCTGCGAAGTTCGAACAAAAGAGCCAGGCTCG...

CDS

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1074 bp · LXL04_028152|LXL04_028152|OH1004|CDS

ATGGGGAAGACGACCAAATGGATCAAGAATTTGCTGGCCGGAAAGAAAGACAGAACCAACAACCAGCCACGAATCGCCACCCAAGATCGTAACCCACTAACCCCCATCTCCACCCATCCCACAACTCCCAAAGAGAAGAGCAGATGGAGCTTCCGGCGATCATCCGCCACCTCCACCACCCCTCCCAACTTCACCACCATTGCATCGACTACACCCACCTCTTTCCAACCTGCGAAGTTCGAACAAAAGAGCCAGGCTCG...

Protein

Download Protein FASTA

357 aa · LXL04_028152|LXL04_028152|OH1004|PROTEIN

MGKTTKWIKNLLAGKKDRTNNQPRIATQDRNPLTPISTHPTTPKEKSRWSFRRSSATSTTPPNFTTIASTTPTSFQPAKFEQKSQARAMATPQEEEATMTRVTIIDVQEATAAIKIQSVFRSYLARKALSALRGLVKLQALVRGHLVRKQAAETLRSMHALVMVQTRARAQRRIKDHRSIQGVYNQELMEENIKIVEMDMCHACPFVALEPSENGQLYYSKPDHSRPHSTYSISDYIETINDFEVCPSYMANTQSSRAKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028152`
TK1151 ID	TkA07G125550
OH-1004 ID	LXL04_028152
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028152

Location Chr06:32605823-32606896 (-)

Description Similar to IQD20: Protein IQ-DOMAIN 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14750`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g16490`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At1g51960`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g62070`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g07240`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028152 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010091 trichome branching Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G51960

ath:AT3G16490

ath:AT4G14750

ath:AT5G07240

ath:AT5G62070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.423

Rank 1 · LXL04_028152 · OH-1004

Nucleus0.369

Rank 2 · LXL04_028152 · OH-1004

Cell membrane0.361

Rank 3 · LXL04_028152 · OH-1004

Endoplasmic reticulum0.045

Rank 4 · LXL04_028152 · OH-1004

Plastid0.035

Rank 5 · LXL04_028152 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00612.34IQ112-128 aa

PF13178.12DUF4005227-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028152	`PF00612.34`	IQ	112	128	4.2e-09	36.1
LXL04_028152	`PF13178.12`	DUF4005	227	295	1.7e-12	48.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8B590`	Arabidopsis thaliana	Protein IQ-DOMAIN 19	45.063%	Swiss-Prot	moderate database homology
`Q9LK76`	Arabidopsis thaliana	Protein IQ-domain 26	35.827%	Swiss-Prot	moderate database homology
`Q9ZU28`	Arabidopsis thaliana	Protein IQ-DOMAIN 27	33.766%	Swiss-Prot	weak database homology
`Q9FIT1`	Arabidopsis thaliana	Protein IQ-DOMAIN 23	36.123%	Swiss-Prot	weak database homology
`Q9LYP2`	Arabidopsis thaliana	Protein IQ-DOMAIN 24	68.254%	Swiss-Prot	weak database homology

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