LXL04_027983 | RubberDandelionOmics

Gene overview

LXL04_027983

Reference: OH-1004 Chr: Chr06 Coordinates: 28170991-28171728 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · LXL04_027983|LXL04_027983|OH1004|cDNA

ATGGAGAATCGCTCAAAATTACAAATCTCCAAAGCCTTTCAAGCCGCCTTCAGTTCTTGCCGGCCGAAAACCAACTCCGACGTCTCCGATCGCCAAGTATCCTTCGTGAAAACCTCCCACCACCGCCGCCTCATCGATCTTTTCTCACCAAAACCTCAACCACTTTCTTCAACGTACTGTAATCCCAAACCCCATCTTTCCCGGCTCGGAACCACACCTTATCCGGCGAACACAGACCGGCAGACACCGCATTCCATTTC...

CDS

Download CDS FASTA

738 bp · LXL04_027983|LXL04_027983|OH1004|CDS

ATGGAGAATCGCTCAAAATTACAAATCTCCAAAGCCTTTCAAGCCGCCTTCAGTTCTTGCCGGCCGAAAACCAACTCCGACGTCTCCGATCGCCAAGTATCCTTCGTGAAAACCTCCCACCACCGCCGCCTCATCGATCTTTTCTCACCAAAACCTCAACCACTTTCTTCAACGTACTGTAATCCCAAACCCCATCTTTCCCGGCTCGGAACCACACCTTATCCGGCGAACACAGACCGGCAGACACCGCATTCCATTTC...

Protein

Download Protein FASTA

245 aa · LXL04_027983|LXL04_027983|OH1004|PROTEIN

MENRSKLQISKAFQAAFSSCRPKTNSDVSDRQVSFVKTSHHRRLIDLFSPKPQPLSSTYCNPKPHLSRLGTTPYPANTDRQTPHSISPVHEKSSKRGRKKPHYRKRRNTASFSSLTDNYYNNWWSSDESDGKNTLFSRQSFSSESLESVRKTRAKRSGGGCKDHGAAVAVDGVAVAKESSDPHEDFRVSMVDMIVEKGIFRFEELENLVECFLSLNSEEHHKVIFEVFAEIWEILVSKSDLYNKE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027983`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027983

Location Chr06:28170991-28171728 (-)

Description Similar to OFP8: Transcription repressor OFP8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19650`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	Arabidopsis ovate family proteins, a novel transcriptional repressor family, control multiple aspects of plant growth and development.2011 · DOI: 10.1371/journal.pone.0023896
`At2g18500`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At3g52525`	Transcriptional repressor that regulates multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release
`At5g58360`	Transcriptional repressor that may regulate multiple aspects of plant growth and development through the regulation of BEL1-LIKE (BLH) and KNOX TALE (KNAT) homeodomain transcription factors.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0864000`	Probable transcriptional repressor that regulates multiple aspects of plant growth and development, partly through brassinosteroid (BR) signaling pathway.	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.2016 · DOI: 10.1371/journal.pgen.1006118

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027983 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1900457 regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G18500

ath:AT3G52525

ath:AT5G19650

ath:AT5G58360

dosa:Os01g0864000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.422

Rank 1 · LXL04_027983 · OH-1004

Nucleus0.396

Rank 2 · LXL04_027983 · OH-1004

Cell membrane0.305

Rank 3 · LXL04_027983 · OH-1004

Endoplasmic reticulum0.077

Rank 4 · LXL04_027983 · OH-1004

Plastid0.038

Rank 5 · LXL04_027983 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04844.19Ovate179-234 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027983	`PF04844.19`	Ovate	179	234	1.8e-23	83.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E9B4`	Arabidopsis thaliana	Transcription repressor OFP8	32.636%	Swiss-Prot	moderate database homology
`Q9ZU65`	Arabidopsis thaliana	Transcription repressor OFP7	57.746%	Swiss-Prot	weak database homology
`Q3EAL1`	Arabidopsis thaliana	Transcription repressor OFP6	53.030%	Swiss-Prot	weak database homology
`Q9LVL4`	Arabidopsis thaliana	Transcription repressor OFP3	41.667%	Swiss-Prot	weak database homology
`Q94CV1`	Oryza sativa subsp. japonica	Transcription repressor OFP8	53.846%	Swiss-Prot	weak database homology

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