Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2313 bp · LXL04_027896|LXL04_027896|OH1004|cDNA
atggcAAGCCCAAGCTGTAATCCCGATGTCACATTGGAAGTTAGAGAAGAATACCCATACCCATACCCATCGAATGTTTATACCCCCAGTTTTGTTACCGTGAAGCTGAATGGTAAGGACAAGTATGGTATTTGGAAAACACAGATACTATGTCTCTTAGAGAGTCATGGCATGCTTGGTTTCATTGATGGAACACATGTAAACCCTCAGACTAGTGTCACCGGGAAGGAGAAGGTGGGCGACCATGAAACTCGTCAGGG...
2313 bp · LXL04_027896|LXL04_027896|OH1004|CDS
ATGGCAAGCCCAAGCTGTAATCCCGATGTCACATTGGAAGTTAGAGAAGAATACCCATACCCATACCCATCGAATGTTTATACCCCCAGTTTTGTTACCGTGAAGCTGAATGGTAAGGACAAGTATGGTATTTGGAAAACACAGATACTATGTCTCTTAGAGAGTCATGGCATGCTTGGTTTCATTGATGGAACACATGTAAACCCTCAGACTAGTGTCACCGGGAAGGAGAAGGTGGGCGACCATGAAACTCGTCAGGG...
Protein
Download Protein FASTA770 aa · LXL04_027896|LXL04_027896|OH1004|PROTEIN
MASPSCNPDVTLEVREEYPYPYPSNVYTPSFVTVKLNGKDKYGIWKTQILCLLESHGMLGFIDGTHVNPQTSVTGKEKVGDHETRQGLWRRSDALVKGWILGSLSEETFRCVLNSLAGKSHQQIDGDFSAKDVWDELQTMYGPPPQLQTVYGPVGLPQRALDKLEDELRARIHQLFYTALLKVRSDEIDRILGNKEVTVIDKITNNGNTALHVAVGATRKSELLQKLLELTPKNTQLLDLRNSDGSTLLHVAAIVGNTQA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027896 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027896 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:25890182-25893309 (+) | ||||||||||||
| Description | Similar to ITN1: Ankyrin repeat-containing protein ITN1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0009651 response to salt stress Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT3G12360 dosa:Os01g0837000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12796.14Ank_2221-305 aaPF13857.13Ank_5238-286 aaPF12796.14Ank_2464-540 aaPF13962.12PGG602-716 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027896 | PF12796.14 | Ank_2 | 221 | 305 | 4e-18 | 66.5 |
| LXL04_027896 | PF13857.13 | Ank_5 | 238 | 286 | 3.3e-12 | 47.2 |
| LXL04_027896 | PF12796.14 | Ank_2 | 464 | 540 | 4e-18 | 66.5 |
| LXL04_027896 | PF13962.12 | PGG | 602 | 716 | 5.1e-23 | 81.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.