LXL04_027894 | RubberDandelionOmics

Gene overview

LXL04_027894

Reference: OH-1004 Chr: Chr06 Coordinates: 25859376-25868537 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4707 bp · LXL04_027894|LXL04_027894|OH1004|cDNA

ACGAAGAACAAGAAGATAATACAAATCAATCAAATGAAGAGGGAATTGGCTCAATTACTGGACTCCAGCCAGGATCGGACTGCTAGAATTCGAGTTGAACATGTAATCAGGGAAGAGAAGATGATAGCGGCGTATGATTTGATAGAGATATATTGTGAACTTATTGTCGCACGTTTACCTATCATTGAATCGCAAAAAACTTGTCCAATTGATTTGAAGGAAGCAATCACTAGCGTGATTTATGCAGCTCCTAGATGTTC...

CDS

Download CDS FASTA

4674 bp · LXL04_027894|LXL04_027894|OH1004|CDS

ATGAAGAGGGAATTGGCTCAATTACTGGACTCCAGCCAGGATCGGACTGCTAGAATTCGAGTTGAACATGTAATCAGGGAAGAGAAGATGATAGCGGCGTATGATTTGATAGAGATATATTGTGAACTTATTGTCGCACGTTTACCTATCATTGAATCGCAAAAAACTTGTCCAATTGATTTGAAGGAAGCAATCACTAGCGTGATTTATGCAGCTCCTAGATGTTCAGAGATACCAGAATTAGTAGATGCTAGAAAAAA...

Protein

Download Protein FASTA

1557 aa · LXL04_027894|LXL04_027894|OH1004|PROTEIN

MKRELAQLLDSSQDRTARIRVEHVIREEKMIAAYDLIEIYCELIVARLPIIESQKTCPIDLKEAITSVIYAAPRCSEIPELVDARKNFTAKYGKEFVSKALELRPDSGVNRMKEPVMFEEKLNRRYTLGTHNITSTDTNPSGMASEMMNRRHSFHNNSNNNSSSGKETNWDMRFKDATSAAQAAAESAERASMAARAAAQLSSHRNHSSQSHQSPKASKSIKNPSEEHSSRGDDESETDSDDDDDESRKFDMGFEYDEGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027894`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_027894`
Location	Chr06:25859376-25868537 (+)
Description	Similar to DDB_G0289029: IST1-like protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027894` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0008104 intracellular protein localization Biological Process GO:0015031 protein transport Biological Process GO:0036258 multivesicular body assembly Biological Process GO:0045184 establishment of protein localization Biological Process GO:0045862 positive regulation of proteolysis Biological Process GO:0051301 cell division Biological Process GO:0061640 cytoskeleton-dependent cytokinesis Biological Process GO:0061952 midbody abscission Biological Process GO:1904903 ESCRT III complex disassembly Biological Process GO:0000785 chromatin Cellular Component GO:0005576 extracellular region Cellular Component GO:0005635 nuclear envelope Cellular Component
KEGG gene cross-reference	bta:508900 ddi:DDB_G0289029 hsa:9798 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.453

Rank 1 · LXL04_027894 · OH-1004

Cell membrane0.371

Rank 2 · LXL04_027894 · OH-1004

Nucleus0.245

Rank 3 · LXL04_027894 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_027894 · OH-1004

Golgi apparatus0.041

Rank 5 · LXL04_027894 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03398.20Ist11-111 aa

PF03398.20Ist1911-1075 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027894	`PF03398.20`	Ist1	1	111	2.5e-98	327.4
LXL04_027894	`PF03398.20`	Ist1	911	1075	2.5e-98	327.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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