LXL04_027885 | RubberDandelionOmics

Gene overview

LXL04_027885

Reference: OH-1004 Chr: Chr06 Coordinates: 25604821-25609736 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2056 bp · LXL04_027885|LXL04_027885|OH1004|cDNA

GGGTTTGAATTCCGTTCGGTCGTATAAACCTTGTCTATTATCCCAAACCTTTACCTACAAGAGGGGCCAACCCTTTGCGTTAATTGAGAAGCAGTGGTGGCATACAATACACTCCACCCCGATCCACCGCTGCACGCCAGAAGCACTGAAGTCCCTTTCTGTACTTCCCACTCCGCCCCACTCCGCCTTTCTCCTCTAACTACTCCCTCCTCGCCGCCGGCGGTCACTGTTCCATTTCATCACTAAACTCGTGCTCGCAG...

CDS

Download CDS FASTA

1830 bp · LXL04_027885|LXL04_027885|OH1004|CDS

CTGTTCCATTTCATCACTAAACTCGTGCTCGCAGACTTTGTTATCTCCATCCACAACATCACAATGTTGCCAAAATTACTTCCCCGTCTCTTCTTCGTCCTCATTCTTGTCGATCTTCTCTGCTTTAGATGTTTACTTGCCGCCGAAGAATCGTTTATTTTCAGCGAAGACGTGAGCGTCGTCAATGCCACTACTACCGGATCAAATAGATCTAAGGAAGATAGCTTTGCTGGCATGCTTGATCGTGCTCTTGAAAAGGA...

Protein

Download Protein FASTA

609 aa · LXL04_027885|LXL04_027885|OH1004|PROTEIN

MFHFITKLVLADFVISIHNITMLPKLLPRLFFVLILVDLLCFRCLLAAEESFIFSEDVSVVNATTTGSNRSKEDSFAGMLDRALEKEFPENDEQSDGTDPGSFNNSVAGQQAVLETVARVKSKRNDTKDDKSFQLHDVFTLDSENRPEDTPRLIDSKDNVFIMSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGLSFVNELVQVETVAQFGVIFLLFALGLEFSAAKLRVVRAVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027885`
TK1151 ID	TkA07G100460
OH-1004 ID	LXL04_027885
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 96.552 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027885

Location Chr06:25604821-25609736 (+)

Description Similar to KEA4: K(+) efflux antiporter 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19600`	May act as an electroneutral K⁺/H⁺ antiporter in K⁺ homeostasis and osmotic adjustment.	A novel AtKEA gene family, homolog of bacterial K+/H+ antiporters, plays potential roles in K+ homeostasis and osmotic adjustment in Arabidopsis.2013 · DOI: 10.1371/journal.pone.0081463 Golgi-localized cation/proton exchangers regulate ionic homeostasis and skotomorphogenesis in Arabidopsis.2019 · DOI: 10.1111/pce.13452 K + Efflux Antiporters 4, 5, and 6 Mediate pH and K + Homeostasis in Endomembrane Compartments.2018 · DOI: 10.1104/pp.18.01053 Evidence for potassium transport activity of Arabidopsis KEA1-KEA6.2019 · DOI: 10.1038/s41598-019-46463-7
`At5g11800`	May act as an electroneutral K⁺/H⁺ antiporter in K⁺ homeostasis and osmotic adjustment.	Golgi-localized cation/proton exchangers regulate ionic homeostasis and skotomorphogenesis in Arabidopsis.2019 · DOI: 10.1111/pce.13452 K + Efflux Antiporters 4, 5, and 6 Mediate pH and K + Homeostasis in Endomembrane Compartments.2018 · DOI: 10.1104/pp.18.01053 Evidence for potassium transport activity of Arabidopsis KEA1-KEA6.2019 · DOI: 10.1038/s41598-019-46463-7
`At5g51710`	May act as an electroneutral K⁺/H⁺ antiporter in K⁺ homeostasis and osmotic adjustment.	A novel AtKEA gene family, homolog of bacterial K+/H+ antiporters, plays potential roles in K+ homeostasis and osmotic adjustment in Arabidopsis.2013 · DOI: 10.1371/journal.pone.0081463 Golgi-localized cation/proton exchangers regulate ionic homeostasis and skotomorphogenesis in Arabidopsis.2019 · DOI: 10.1111/pce.13452 K + Efflux Antiporters 4, 5, and 6 Mediate pH and K + Homeostasis in Endomembrane Compartments.2018 · DOI: 10.1104/pp.18.01053 Evidence for potassium transport activity of Arabidopsis KEA1-KEA6.2019 · DOI: 10.1038/s41598-019-46463-7

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027885 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015386 potassium:proton antiporter activity Molecular Function

GO:0043495 protein-membrane adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G19600

ath:AT5G11800

ath:AT5G51710

hsa:55002

mmu:234076

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.427

Rank 1 · LXL04_027885 · OH-1004

Cytoplasm0.231

Rank 2 · LXL04_027885 · OH-1004

Endoplasmic reticulum0.195

Rank 3 · LXL04_027885 · OH-1004

Lysosome / Vacuole0.156

Rank 4 · LXL04_027885 · OH-1004

Cell membrane0.152

Rank 5 · LXL04_027885 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00999.27Na_H_Exchanger187-553 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027885	`PF00999.27`	Na_H_Exchanger	187	553	4.1e-72	243.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUN3`	Arabidopsis thaliana	K(+) efflux antiporter 4	81.284%	Swiss-Prot	strong database homology
`B5X0N6`	Arabidopsis thaliana	K(+) efflux antiporter 6	78.491%	Swiss-Prot	strong database homology
`Q8VYR9`	Arabidopsis thaliana	K(+) efflux antiporter 5	68.691%	Swiss-Prot	strong database homology

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