Gene Card
Gene overview
cDNA / CDS / Protein Sequences
925 bp · LXL04_027842|LXL04_027842|OH1004|cDNA
GATAAAAACCagtttttatttttgattttgataAACCCCCAACAGCGGCCCATTCCAACGTCGTTATCATTTTGTAGCGTGTTCTCCGGTTGCCACCGGCCAACCGACGTTTCTAGCTCCATGCGCCACCTCATCACCCTGTTCAACTGCCACGTTCCGATTCCTCTGCGATGCTAATTTATATACACAGGGCGGCAAACGTAAATTTTCTTCATATTCCTTTAATTATCCGTCTTTAGCTGCACTATCATTTAATACGC...
663 bp · LXL04_027842|LXL04_027842|OH1004|CDS
ATGGAAATCTTCAATGGACGATTGAACAACTGTGATCGGCATGGTAATTCCGACGGTGATGACAGGGGTAACCTGGTGATTGACATCTACCCTCTTAGTAGTTATTACTTCAGTTCAAAACCTGCTGTTGCATCCAAGGACGAAACCGTAGCCGATCGCACACAACGTTTGAAATCCAATTATGATGCTCATGGCATGAGGAATTGTGTGGAGGCGGTGATTTTGGTTGAACTGTTCAAGCACCCTCATCTATTGTTGCT...
Protein
Download Protein FASTA220 aa · LXL04_027842|LXL04_027842|OH1004|PROTEIN
MEIFNGRLNNCDRHGNSDGDDRGNLVIDIYPLSSYYFSSKPAVASKDETVADRTQRLKSNYDAHGMRNCVEAVILVELFKHPHLLLLQSKNCIYKLPGGRLRPGESDVDGLKRKLSSKLSADEDCYLSQWEVGECIGTWWKSDFETLPHPYLPASGKNPKECTKIYLVKLPSSKDFIVPQNLKLLAVPLCQLHENRKTYGSIIAGIPQLLSLFSINIVDT
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027842 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027842 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:24610862-24612249 (+) | |||||||||
| Description | Similar to CFIS1: Pre-mRNA cleavage factor Im 25 kDa subunit 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006364 rRNA processing Biological Process GO:0006397 mRNA processing Biological Process GO:0010608 post-transcriptional regulation of gene expression Biological Process GO:0030154 cell differentiation Biological Process GO:0031124 mRNA 3'-end processing Biological Process GO:0051262 protein tetramerization Biological Process GO:0051290 protein heterotetramerization Biological Process GO:0110104 mRNA alternative polyadenylation Biological Process GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway Biological Process GO:2000738 positive regulation of stem cell differentiation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G25550 ath:AT4G29820 bta:518859 hsa:11051 pon:100172645 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13869.13NUDIX_226-213 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027842 | PF13869.13 | NUDIX_2 | 26 | 213 | 3.5e-73 | 245.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.