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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_027766
Reference: OH-1004 Chr: Chr06 Coordinates: 23640884-23644973 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1305 bp · LXL04_027766|LXL04_027766|OH1004|cDNA

ATGGACCCGAGCATCTCCACCGCCGGATCACCACCGCCCAACAAGAGGAGAAATGTCTTTTCTACCACAAAAATTTCTGCCTTCAGTGACGACATTATTTCTGCGGTTTTATCGTTCCTCGATCTCGTCCATCTAATTCGCTGCACCGCCGTCTGCAAGTCATGGAGACAAGTCATTGATAAATCAAAGCTACTCCAAACTTTGTATTACAAACAAAAAGGGATTCCTGGTGGTGATTTTGACAAATCTACCCCTTCAGA...

CDS

Download CDS FASTA

1305 bp · LXL04_027766|LXL04_027766|OH1004|CDS

ATGGACCCGAGCATCTCCACCGCCGGATCACCACCGCCCAACAAGAGGAGAAATGTCTTTTCTACCACAAAAATTTCTGCCTTCAGTGACGACATTATTTCTGCGGTTTTATCGTTCCTCGATCTCGTCCATCTAATTCGCTGCACCGCCGTCTGCAAGTCATGGAGACAAGTCATTGATAAATCAAAGCTACTCCAAACTTTGTATTACAAACAAAAAGGGATTCCTGGTGGTGATTTTGACAAATCTACCCCTTCAGA...

Protein

Download Protein FASTA

434 aa · LXL04_027766|LXL04_027766|OH1004|PROTEIN

MDPSISTAGSPPPNKRRNVFSTTKISAFSDDIISAVLSFLDLVHLIRCTAVCKSWRQVIDKSKLLQTLYYKQKGIPGGDFDKSTPSEGIWRRLQALAISQHRSSLRTGSIDIYQWKGHSDGIDKCKMKMGLLLTGGSGKVMRLWSVERYKCLAEYDLPHIGSLIDFNFDESKVVGLVGNHICLWRRNERKNIFSSQGGQFPRSSCMCYVDPEAVVGCDDGRARIFDMYGRKWARIIKMHDGPITCLSLSDDHLLIGGSSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_027766
TK1151 IDTkA07G092920
OH-1004 IDLXL04_027766
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_027766
LocationChr06:23640884-23644973 (-)
DescriptionSimilar to At3g52030: F-box/WD-40 repeat-containing protein At3g52030
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52030 F-box/WD-40 repeat-containing protein At3g52030. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027766 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000266 mitochondrial fission Biological Process
GO:0006281 DNA repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007219 Notch signaling pathway Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0010992 ubiquitin recycling Biological Process
GO:0016559 peroxisome fission Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0031398 positive regulation of protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
KEGG gene cross-reference
ath:AT3G52030
rno:100360914
ssl:SS1G_08568
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869
Rank 1 · LXL04_027766 · OH-1004
Cytoplasm0.162
Rank 2 · LXL04_027766 · OH-1004
Mitochondrion0.029
Rank 3 · LXL04_027766 · OH-1004
Cell membrane0.028
Rank 4 · LXL04_027766 · OH-1004
Plastid0.013
Rank 5 · LXL04_027766 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box26-65 aa
PF12937.13F-box-like30-69 aa
PF23381.2Beta-prop_IFT122_1st113-352 aa
PF24814.2WD40_Prp19115-340 aa
PF25175.2Beta-prop_WDR5116-287 aa
PF24796.2WDR55130-259 aa
PF23414.2Beta-prop_EML_2131-253 aa
PF23409.2Beta-prop_EML137-301 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_027766PF00646.39F-box26657.9e-0832.6
LXL04_027766PF12937.13F-box-like30692.6e-0731.0
LXL04_027766PF23381.2Beta-prop_IFT122_1st1133526.6e-1349.3
LXL04_027766PF24814.2WD40_Prp191153402.7e-0937.2
LXL04_027766PF25175.2Beta-prop_WDR51162871.7e-1454.5
LXL04_027766PF24796.2WDR551302593.7e-1246.6
LXL04_027766PF23414.2Beta-prop_EML_21312531.6e-1248.1
LXL04_027766PF23409.2Beta-prop_EML1373011.1e-0835.7
LXL04_027766PF25171.2Beta-prop_WDR36-Utp21_1st1433171.4e-0835.3
LXL04_027766PF24807.2WD40_CDC20-Fz1644301.6e-1557.9
LXL04_027766PF25172.2Beta-prop_WDR3_2nd1662695.2e-0936.5
LXL04_027766PF25173.2Beta-prop_WDR3_1st1793513e-1453.9
LXL04_027766PF13570.14Beta-prop_ACSF42033652.9e-0730.9
LXL04_027766PF24817.2WD40_WDHD1_1st2033293.8e-0627.0
LXL04_027766PF23756.2Beta-prop_HPS52053271e-0525.7
LXL04_027766PF25174.2Beta-prop_THOC32143612.5e-1350.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SV01Arabidopsis thalianaF-box/WD-40 repeat-containing protein At3g5203044.470%Swiss-Protmoderate database homology

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