LXL04_027657 | RubberDandelionOmics

Gene overview

LXL04_027657

Reference: OH-1004 Chr: Chr06 Coordinates: 21314459-21315470 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

450 bp · LXL04_027657|LXL04_027657|OH1004|cDNA

ATGGCACTAACTGGTAAAAGGGTTGCTAAGGTAAAAATTGAGTCGGACTCTCATCTTTTTCTTGAGTTATGGAAGTCGAAACAACACGAGGTTTCCAGCATGAGCCCGACCACCTACCGGAACTGTCAACGCCATGAAGACACAGTTGAAACCGTGGGTTGTCTTCATTCATGGAACTATTGCCTTGATGGAAAAGAAAGTTTTGCGAAAACAATAATCATTGACGAAGATGAAAATTCAATCACCTATAAGATACTCGA...

CDS

Download CDS FASTA

450 bp · LXL04_027657|LXL04_027657|OH1004|CDS

ATGGCACTAACTGGTAAAAGGGTTGCTAAGGTAAAAATTGAGTCGGACTCTCATCTTTTTCTTGAGTTATGGAAGTCGAAACAACACGAGGTTTCCAGCATGAGCCCGACCACCTACCGGAACTGTCAACGCCATGAAGACACAGTTGAAACCGTGGGTTGTCTTCATTCATGGAACTATTGCCTTGATGGAAAAGAAAGTTTTGCGAAAACAATAATCATTGACGAAGATGAAAATTCAATCACCTATAAGATACTCGA...

Protein

Download Protein FASTA

149 aa · LXL04_027657|LXL04_027657|OH1004|PROTEIN

MALTGKRVAKVKIESDSHLFLELWKSKQHEVSSMSPTTYRNCQRHEDTVETVGCLHSWNYCLDGKESFAKTIIIDEDENSITYKILEGDLMELYKTFVVNIHVETQGSQNLVTWTIEYEKLNSTVPDPNTVVDFYTKATKDIETHHLQK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027657`
TK1151 ID	TkA07G083920
OH-1004 ID	LXL04_027657
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 77.852 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027657

Location Chr06:21314459-21315470 (-)

Description Similar to Kirola

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70830`	Can bind steroids (in vitro), and may also bind other types of hydrophobic ligands.	Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.2009 · DOI: 10.1002/prot.22396
`At1g70850`	MLP-like protein 34.	No verified direct reference in this release
`At1g70840`	MLP-like protein 31.	No verified direct reference in this release
`At1g70890`	MLP-like protein 43.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027657 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002253 activation of immune response Biological Process

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G70830

ath:AT1G70840

ath:AT1G70850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.852

Rank 1 · LXL04_027657 · OH-1004

Nucleus0.256

Rank 2 · LXL04_027657 · OH-1004

Endoplasmic reticulum0.049

Rank 3 · LXL04_027657 · OH-1004

Cell membrane0.049

Rank 4 · LXL04_027657 · OH-1004

Mitochondrion0.042

Rank 5 · LXL04_027657 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00407.26Bet_v_13-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027657	`PF00407.26`	Bet_v_1	3	148	9.1e-29	101.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SSK9`	Arabidopsis thaliana	MLP-like protein 28	36.667%	Swiss-Prot	moderate database homology
`Q9SSK7`	Arabidopsis thaliana	MLP-like protein 34	38.129%	Swiss-Prot	moderate database homology
`Q941R6`	Arabidopsis thaliana	MLP-like protein 31	34.000%	Swiss-Prot	moderate database homology
`Q9SSK5`	Arabidopsis thaliana	MLP-like protein 43	35.333%	Swiss-Prot	moderate database homology

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