LXL04_027636 | RubberDandelionOmics

Gene overview

LXL04_027636

Reference: OH-1004 Chr: Chr06 Coordinates: 20845294-20847215 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1644 bp · LXL04_027636|LXL04_027636|OH1004|cDNA

atgaaaaatGGTCGTACTTCTCCCATTAAATGGCAAGACCTTCAACCGGTTTTTGAAAAAGCTGCAAATAACAAGTTAAACAGCTACAAAGCTTTGAAAAACAAGTATGATGGCATGCGAAAAGAATACAGTCTCTGGAAGTCGTTAAAATTTGGGGAGACTGGCCTAGGTTGGGATGAAAGTACAAAACAACTTAATTGTTCGGAAGAATGGTGGGATAGGAAAATTAAGTATTTAAAAAAACAACCTTCTAAAGCACT...

CDS

Download CDS FASTA

1644 bp · LXL04_027636|LXL04_027636|OH1004|CDS

ATGAAAAATGGTCGTACTTCTCCCATTAAATGGCAAGACCTTCAACCGGTTTTTGAAAAAGCTGCAAATAACAAGTTAAACAGCTACAAAGCTTTGAAAAACAAGTATGATGGCATGCGAAAAGAATACAGTCTCTGGAAGTCGTTAAAATTTGGGGAGACTGGCCTAGGTTGGGATGAAAGTACAAAACAACTTAATTGTTCGGAAGAATGGTGGGATAGGAAAATTAAGTATTTAAAAAAACAACCTTCTAAAGCACT...

Protein

Download Protein FASTA

547 aa · LXL04_027636|LXL04_027636|OH1004|PROTEIN

MKNGRTSPIKWQDLQPVFEKAANNKLNSYKALKNKYDGMRKEYSLWKSLKFGETGLGWDESTKQLNCSEEWWDRKIKYLKKQPSKALQEEWNQIFGDAVASGIDCVAPSMDPNNNVPHLIIDDEDPGAGGHVPIGEAETGDDPLFSSQYPQQSTPLENRENGDDAYFSNLMGFATDVFSPNNVGGSNTEKSSKKGLKLKPAQMKGNKRESAGAKMFKNFMVEQNSNQKRTIEILEMDTSPINQSQDFGIIDAVSLINNMV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027636`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027636

Location Chr06:20845294-20847215 (-)

Description Similar to At3g55350: Protein ALP1-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55350`	Transposase-derived protein that may have nuclease activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027636 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000118 histone deacetylase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0034451 centriolar satellite Cellular Component

GO:0004518 nuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G55350

bta:514442

hsa:283254

mmu:241547

rno:690164

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.934

Rank 1 · LXL04_027636 · OH-1004

Cytoplasm0.169

Rank 2 · LXL04_027636 · OH-1004

Mitochondrion0.023

Rank 3 · LXL04_027636 · OH-1004

Cell membrane0.018

Rank 4 · LXL04_027636 · OH-1004

Extracellular0.012

Rank 5 · LXL04_027636 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12776.14Myb_DNA-bind_37-74 aa

PF04827.21Plant_tran314-485 aa

PF01609.28DDE_Tnp_1315-480 aa

PF13359.13DDE_Tnp_4321-482 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027636	`PF12776.14`	Myb_DNA-bind_3	7	74	1.2e-09	39.7
LXL04_027636	`PF04827.21`	Plant_tran	314	485	1.6e-07	31.8
LXL04_027636	`PF01609.28`	DDE_Tnp_1	315	480	1.7e-10	41.7
LXL04_027636	`PF13359.13`	DDE_Tnp_4	321	482	3.8e-27	95.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2U3`	Arabidopsis thaliana	Protein ALP1-like	24.125%	Swiss-Prot	weak database homology

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