LXL04_027624 | RubberDandelionOmics

Gene overview

LXL04_027624

Reference: OH-1004 Chr: Chr06 Coordinates: 20535346-20543037 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1164 bp · LXL04_027624|LXL04_027624|OH1004|cDNA

ATGGAGAACAATTATCATGGCGATTTAGCAGATATTTTCCGGCCAGGCAGTGTCAGCTCCGGTGATCCTCCGGGGGTTTCAGATTGGCAATACTTTGATCATGATCAAGAGCCACAGATGATCCAAAAGTCAACAAGAATCCATGAGCATCAAGATTTTGGTCAACCCTTCACCAGTCTACTTTCAGATCCACTCATTCATGACGAAGGAACATCAATCCCATGCTTCTTTGGAACAAGTTTAGATGAACTTGAACAGCA...

CDS

Download CDS FASTA

1164 bp · LXL04_027624|LXL04_027624|OH1004|CDS

ATGGAGAACAATTATCATGGCGATTTAGCAGATATTTTCCGGCCAGGCAGTGTCAGCTCCGGTGATCCTCCGGGGGTTTCAGATTGGCAATACTTTGATCATGATCAAGAGCCACAGATGATCCAAAAGTCAACAAGAATCCATGAGCATCAAGATTTTGGTCAACCCTTCACCAGTCTACTTTCAGATCCACTCATTCATGACGAAGGAACATCAATCCCATGCTTCTTTGGAACAAGTTTAGATGAACTTGAACAGCA...

Protein

Download Protein FASTA

387 aa · LXL04_027624|LXL04_027624|OH1004|PROTEIN

MENNYHGDLADIFRPGSVSSGDPPGVSDWQYFDHDQEPQMIQKSTRIHEHQDFGQPFTSLLSDPLIHDEGTSIPCFFGTSLDELEQQPPATTTTTRTPLGFDDHKMKDNHNHNHNHNIFSKMLQISPNAAKSTLSSSTNDHIITSSCNSSSAAASSSSKRCLMETSSTTLQISSPRNPGIKRRKSQAKKVVCIPAPAPANSRPTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027624`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027624

Location Chr06:20535346-20543037 (+)

Description Similar to WRKY14: Probable WRKY transcription factor 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30650`	Transcription factor.	No verified direct reference in this release
`At2g34830`	Transcription factor.	No verified direct reference in this release
`At4g01250`	Transcription factor involved in the expression of defense genes in innate immune response of plants.	MAP kinase signalling cascade in Arabidopsis innate immunity.2002 · DOI: 10.1038/415977a
`At5g52830`	Transcription factor.	No verified direct reference in this release
`At1g29280`	Transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027624 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0007263 nitric oxide mediated signal transduction Biological Process

GO:0009408 response to heat Biological Process

GO:0009555 pollen development Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0071456 cellular response to hypoxia Biological Process

KEGG gene cross-reference

ath:AT1G29280

ath:AT1G30650

ath:AT2G34830

ath:AT4G01250

ath:AT5G52830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · LXL04_027624 · OH-1004

Cytoplasm0.083

Rank 2 · LXL04_027624 · OH-1004

Cell membrane0.027

Rank 3 · LXL04_027624 · OH-1004

Endoplasmic reticulum0.021

Rank 4 · LXL04_027624 · OH-1004

Plastid0.012

Rank 5 · LXL04_027624 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106.22WRKY211-268 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027624	`PF03106.22`	WRKY	211	268	4e-26	91.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SA80`	Arabidopsis thaliana	Probable WRKY transcription factor 14	57.028%	Swiss-Prot	moderate database homology
`O64747`	Arabidopsis thaliana	Probable WRKY transcription factor 35	44.000%	Swiss-Prot	moderate database homology
`O04609`	Arabidopsis thaliana	WRKY transcription factor 22	51.667%	Swiss-Prot	weak database homology
`Q9FLX8`	Arabidopsis thaliana	Probable WRKY transcription factor 27	56.800%	Swiss-Prot	weak database homology
`Q9LP56`	Arabidopsis thaliana	Probable WRKY transcription factor 65	66.667%	Swiss-Prot	weak database homology

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