LXL04_027621 | RubberDandelionOmics

Gene overview

LXL04_027621

Reference: OH-1004 Chr: Chr06 Coordinates: 20442665-20444591 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · LXL04_027621|LXL04_027621|OH1004|cDNA

ATGAAcatcttcaagaagaagacatCACCCAAAGATGCACTGAGGGAAAGCAAAAGAGACATGGCTGTAGCCACACGGGGTATTGAACGTGAAATTGCATCTTTACAAATGGAGGAGAGGAAGTTAGTGGCAGAGATTAAAAAGACGGCCAAACTTGGGAATGAGGCTGCCACGAAGATATTAGCTCGACAACTTGTTCGCCTTAGGCAACAAATAACAAATTTGCAGGGGAGCCGTGCACAAATAAGAGGTGTAGCAAC...

CDS

Download CDS FASTA

651 bp · LXL04_027621|LXL04_027621|OH1004|CDS

ATGAACATCTTCAAGAAGAAGACATCACCCAAAGATGCACTGAGGGAAAGCAAAAGAGACATGGCTGTAGCCACACGGGGTATTGAACGTGAAATTGCATCTTTACAAATGGAGGAGAGGAAGTTAGTGGCAGAGATTAAAAAGACGGCCAAACTTGGGAATGAGGCTGCCACGAAGATATTAGCTCGACAACTTGTTCGCCTTAGGCAACAAATAACAAATTTGCAGGGGAGCCGTGCACAAATAAGAGGTGTAGCAAC...

Protein

Download Protein FASTA

216 aa · LXL04_027621|LXL04_027621|OH1004|PROTEIN

MNIFKKKTSPKDALRESKRDMAVATRGIEREIASLQMEERKLVAEIKKTAKLGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYANTSISTGMKGATKAMVAMNKEMAPAKQVKVIKEFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVGIASQLSSAPKGRIGPKKVENAAPSSVTNDVDDLEKRLASLRRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027621`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027621

Location Chr06:20442665-20444591 (-)

Description Similar to VPS2.2: Vacuolar protein sorting-associated protein 2 homolog 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44560`	Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs.	No verified direct reference in this release
`At1g03950`	Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs.	No verified direct reference in this release
`At2g06530`	Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027621 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0015031 protein transport Biological Process

GO:0031468 nuclear membrane reassembly Biological Process

GO:0032509 endosome transport via multivesicular body sorting pathway Biological Process

GO:0039702 viral budding via host ESCRT complex Biological Process

GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process

GO:0045324 late endosome to vacuole transport Biological Process

GO:0046761 viral budding from plasma membrane Biological Process

GO:0061952 midbody abscission Biological Process

GO:0070676 intralumenal vesicle formation Biological Process

GO:0071985 multivesicular body sorting pathway Biological Process

GO:0097352 autophagosome maturation Biological Process

KEGG gene cross-reference

ath:AT1G03950

ath:AT2G06530

ath:AT5G44560

ddi:DDB_G0292400

pon:100172566

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.862

Rank 1 · LXL04_027621 · OH-1004

Nucleus0.243

Rank 2 · LXL04_027621 · OH-1004

Mitochondrion0.054

Rank 3 · LXL04_027621 · OH-1004

Cell membrane0.052

Rank 4 · LXL04_027621 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_027621 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03357.27Snf716-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027621	`PF03357.27`	Snf7	16	185	5.3e-36	124.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WTY4`	Arabidopsis thaliana	Vacuolar protein sorting-associated protein 2 homolog 2	82.432%	Swiss-Prot	strong database homology
`Q941D5`	Arabidopsis thaliana	Vacuolar protein sorting-associated protein 2 homolog 3	71.495%	Swiss-Prot	strong database homology
`Q9SKI2`	Arabidopsis thaliana	Vacuolar protein sorting-associated protein 2 homolog 1	40.090%	Swiss-Prot	moderate database homology

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