LXL04_027601 | RubberDandelionOmics

Gene overview

LXL04_027601

Reference: OH-1004 Chr: Chr06 Coordinates: 19929149-19940664 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5994 bp · LXL04_027601|LXL04_027601|OH1004|cDNA

ATGTCGGAAGAGGAGAATTTGTTAAAAGCGGCTAAGAAGTTGCCATGGGAGGATCGGTTGGCACACAAGAACTGGAAGGTGCGTAACGATGCCAACATTGACCTCGCCGCCCTGTGCGACTCTATCACCGATCCTAAAGATCCTCGCATCCGTGAATTGGGGCACTTTTTTAAGAAGACTGTTGCTGATTCGAATGCGCCTGTACAAGATAAGGCGCTGGATGCTTTAATTGCTTACTTAAAAGCAGCAGATGCTGATGC...

CDS

Download CDS FASTA

5994 bp · LXL04_027601|LXL04_027601|OH1004|CDS

ATGTCGGAAGAGGAGAATTTGTTAAAAGCGGCTAAGAAGTTGCCATGGGAGGATCGGTTGGCACACAAGAACTGGAAGGTGCGTAACGATGCCAACATTGACCTCGCCGCCCTGTGCGACTCTATCACCGATCCTAAAGATCCTCGCATCCGTGAATTGGGGCACTTTTTTAAGAAGACTGTTGCTGATTCGAATGCGCCTGTACAAGATAAGGCGCTGGATGCTTTAATTGCTTACTTAAAAGCAGCAGATGCTGATGC...

Protein

Download Protein FASTA

1997 aa · LXL04_027601|LXL04_027601|OH1004|PROTEIN

MSEEENLLKAAKKLPWEDRLAHKNWKVRNDANIDLAALCDSITDPKDPRIRELGHFFKKTVADSNAPVQDKALDALIAYLKAADADAGRFGKEVCDAIVAKCLTGRPKTVEKAQIVFMLWVELEAVDAFLDAMDKAIKAKVAKAVVPAIDVMFQALSEFGSKIVPPKRLLKMLPELFDHQDQNVRASSKGLTLELCRWIGRDAVKSILFEKMRDTMKKELEAEIVNVTASAKPTRKIRSEQDKEPEAEVATEAAGSGPSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027601`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027601

Location Chr06:19929149-19940664 (-)

Description Similar to MOR1: Protein MOR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35630`	Microtubule-binding protein that is essential for cortical microtubules organization and function.	MOR1 is essential for organizing cortical microtubules in plants.2001 · DOI: 10.1038/35079128 Mutation or drug-dependent microtubule disruption causes radial swelling without altering parallel cellulose microfibril deposition in Arabidopsis root cells.2003 · DOI: 10.1105/tpc.011593 Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana.2003 · DOI: 10.1242/dev.00794 Cellulose microfibril alignment recovers from DCB-induced disruption despite microtubule disorganization.2003 · DOI: 10.1046/j.1365-313x.2003.01906.x Aberrant cell plate formation in the Arabidopsis thaliana microtubule organization 1 mutant.2005 · DOI: 10.1093/pcp/pci068 MICROTUBULE ORGANIZATION 1 regulates structure and function of microtubule arrays during mitosis and cytokinesis in the Arabidopsis root.2006 · DOI: 10.1104/pp.105.069989 Hypersensitivity to cytoskeletal antagonists demonstrates microtubule-microfilament cross-talk in the control of root elongation in Arabidopsis thaliana.2006 · DOI: 10.1111/j.1469-8137.2006.01671.x MOR1, the Arabidopsis thaliana homologue of Xenopus MAP215, promotes rapid growth and shrinkage, and suppresses the pausing of microtubules in vivo.2008 · DOI: 10.1242/jcs.039065

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0816400`	Microtubule-associated protein that is essential for cortical microtubules organization and function.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027601 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0002181 cytoplasmic translation Biological Process

GO:0007019 microtubule depolymerization Biological Process

GO:0007051 spindle organization Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0007098 centrosome cycle Biological Process

GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process

GO:0010609 mRNA localization resulting in post-transcriptional regulation of gene expression Biological Process

GO:0022618 protein-RNA complex assembly Biological Process

GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process

GO:0045807 positive regulation of endocytosis Biological Process

KEGG gene cross-reference

ath:AT2G35630

dosa:Os01g0816400

hsa:9793

mmu:75786

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.710

Rank 1 · LXL04_027601 · OH-1004

Nucleus0.179

Rank 2 · LXL04_027601 · OH-1004

Cell membrane0.174

Rank 3 · LXL04_027601 · OH-1004

Golgi apparatus0.138

Rank 4 · LXL04_027601 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_027601 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21041.4XMAP215_CLASP_TOG12-223 aa

PF21041.4XMAP215_CLASP_TOG298-493 aa

PF12348.15CLASP_N298-488 aa

PF02985.29HEAT442-469 aa

PF21041.4XMAP215_CLASP_TOG597-795 aa

PF21041.4XMAP215_CLASP_TOG850-1038 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027601	`PF21041.4`	XMAP215_CLASP_TOG	12	223	5.6e-91	305.1
LXL04_027601	`PF21041.4`	XMAP215_CLASP_TOG	298	493	5.6e-91	305.1
LXL04_027601	`PF12348.15`	CLASP_N	298	488	4.1e-12	46.9
LXL04_027601	`PF02985.29`	HEAT	442	469	1.1e-13	50.8
LXL04_027601	`PF21041.4`	XMAP215_CLASP_TOG	597	795	5.6e-91	305.1
LXL04_027601	`PF21041.4`	XMAP215_CLASP_TOG	850	1038	5.6e-91	305.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94FN2`	Arabidopsis thaliana	Protein MOR1	72.143%	Swiss-Prot	strong database homology
`Q5N749`	Oryza sativa subsp. japonica	Protein MOR1	69.661%	Swiss-Prot	strong database homology

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