LXL04_027529 | RubberDandelionOmics

Gene overview

LXL04_027529

Reference: OH-1004 Chr: Chr06 Coordinates: 18261448-18262943 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · LXL04_027529|LXL04_027529|OH1004|cDNA

ATGGCGAACGATTTGTCTCTTGATCTGGAGGAGCTTCGACATCTTCAAAGCATTGCGAAGAGGCAACGCGTCGTTTCTTTCATATCATCCGAGATTCACAACCTCGAAAAGCAATTAAACGATGCTGCTCCAGTTGCACCCACTCCAACCTCAATTTCAACAAATCTAAAGATAGCTACTGAACCGGCATTAAAGTACACTACTCTCGGATCTTTCAGTTGGGATCAAGATACCGATAAAGTCAAGATCTATGTGTTTTT...

CDS

Download CDS FASTA

651 bp · LXL04_027529|LXL04_027529|OH1004|CDS

ATGGCGAACGATTTGTCTCTTGATCTGGAGGAGCTTCGACATCTTCAAAGCATTGCGAAGAGGCAACGCGTCGTTTCTTTCATATCATCCGAGATTCACAACCTCGAAAAGCAATTAAACGATGCTGCTCCAGTTGCACCCACTCCAACCTCAATTTCAACAAATCTAAAGATAGCTACTGAACCGGCATTAAAGTACACTACTCTCGGATCTTTCAGTTGGGATCAAGATACCGATAAAGTCAAGATCTATGTGTTTTT...

Protein

Download Protein FASTA

216 aa · LXL04_027529|LXL04_027529|OH1004|PROTEIN

MANDLSLDLEELRHLQSIAKRQRVVSFISSEIHNLEKQLNDAAPVAPTPTSISTNLKIATEPALKYTTLGSFSWDQDTDKVKIYVFLEGVNQEKVETEFNPMSVDVKIHDVNGKNYRCGIPKLNKEIVPEKCRVLVKPTKVIITLIKASKGNWLDLHFKDDKLKPSLDKDRDPMAGIMDLMKNMYEDGDDEMKKTIAKAWTDARTGKGADPMQSYR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027529`
TK1151 ID	TkA07G071240
OH-1004 ID	LXL04_027529
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.648 / OH-1004 80.093 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_027529`
Location	Chr06:18261448-18262943 (+)
Description	Similar to Cacybp: Calcyclin-binding protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027529` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0045740 positive regulation of DNA replication Biological Process GO:0060416 response to growth hormone Biological Process GO:0071277 cellular response to calcium ion Biological Process GO:1990830 cellular response to leukemia inhibitory factor Biological Process GO:0005634 nucleus Cellular Component GO:0005641 nuclear envelope lumen Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0019005 SCF ubiquitin ligase complex Cellular Component GO:0030877 beta-catenin destruction complex Cellular Component GO:0044297 cell body Cellular Component
KEGG gene cross-reference	bta:618428 hsa:27101 mcf:101867292 mmu:12301 rno:289144 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.743

Rank 1 · LXL04_027529 · OH-1004

Nucleus0.400

Rank 2 · LXL04_027529 · OH-1004

Mitochondrion0.099

Rank 3 · LXL04_027529 · OH-1004

Cell membrane0.062

Rank 4 · LXL04_027529 · OH-1004

Peroxisome0.059

Rank 5 · LXL04_027529 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09032.17Siah-Interact_N3-40 aa

PF04969.23CS71-147 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027529	`PF09032.17`	Siah-Interact_N	3	40	2.5e-06	28.4
LXL04_027529	`PF04969.23`	CS	71	147	3.3e-16	60.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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