LXL04_027354 | RubberDandelionOmics

Gene overview

LXL04_027354

Reference: OH-1004 Chr: Chr06 Coordinates: 14161889-14164670 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · LXL04_027354|LXL04_027354|OH1004|cDNA

ATGGGGAAACAAGGTGATGCTAATTCACCATTTGGGTCGTTTAAGTATCAGTTTAGGTATCAGAAATTAGTGCAAGGAAATGATCATACAAAGGGGAGGAGGATGTCTGGGGGAGTTTGCCAATGGGACAAGTTTGAGTTGCTCGATGGATTAAAGAGTAACTCCATGAAAATAAGTTCTTTAAAGGGCGCTTATGTTGGCAAAAAGCATACTTGGATCCGTAAACATTTTTCATCAATTGTTTTCACTGTTTTATTGAT...

CDS

Download CDS FASTA

1854 bp · LXL04_027354|LXL04_027354|OH1004|CDS

ATGGGGAAACAAGGTGATGCTAATTCACCATTTGGGTCGTTTAAGTATCAGTTTAGGTATCAGAAATTAGTGCAAGGAAATGATCATACAAAGGGGAGGAGGATGTCTGGGGGAGTTTGCCAATGGGACAAGTTTGAGTTGCTCGATGGATTAAAGAGTAACTCCATGAAAATAAGTTCTTTAAAGGGCGCTTATGTTGGCAAAAAGCATACTTGGATCCGTAAACATTTTTCATCAATTGTTTTCACTGTTTTATTGAT...

Protein

Download Protein FASTA

617 aa · LXL04_027354|LXL04_027354|OH1004|PROTEIN

MGKQGDANSPFGSFKYQFRYQKLVQGNDHTKGRRMSGGVCQWDKFELLDGLKSNSMKISSLKGAYVGKKHTWIRKHFSSIVFTVLLMGFLLLLDSLMGSIFEPSVLQNSPTLNKISTQIQMFGDEGGKNVVEMYGRLSRMASSALAERELKQEESTFWKEPYRKASLWSPCADRKDLKNEGKLQSNNGYIFVSANGGLNQQRVAVCNAVAVASLLNATLVIPRFLYSNVWKDPSQFGDIYQEDYFMKTLKDEVNIVKDLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027354`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027354

Location Chr06:14161889-14164670 (-)

Description Similar to OFUT8: O-fucosyltransferase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29200`	O-fucosyltransferase 8.	No verified direct reference in this release
`At1g62330`	O-fucosyltransferase 15.	No verified direct reference in this release
`At1g11990`	O-fucosyltransferase 2.	No verified direct reference in this release
`At2g01480`	Glycosyltransferase that plays a role in cell adhesion.	No verified direct reference in this release
`At1g14970`	O-fucosyltransferase 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027354 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0007155 cell adhesion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G11990

ath:AT1G14970

ath:AT1G29200

ath:AT1G62330

ath:AT2G01480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.778

Rank 1 · LXL04_027354 · OH-1004

Endoplasmic reticulum0.091

Rank 2 · LXL04_027354 · OH-1004

Cell membrane0.065

Rank 3 · LXL04_027354 · OH-1004

Cytoplasm0.056

Rank 4 · LXL04_027354 · OH-1004

Extracellular0.040

Rank 5 · LXL04_027354 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250.16O-FucT189-550 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027354	`PF10250.16`	O-FucT	189	550	1.1e-92	312.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HZX7`	Arabidopsis thaliana	O-fucosyltransferase 8	58.266%	Swiss-Prot	strong database homology
`F4HYR4`	Arabidopsis thaliana	O-fucosyltransferase 15	58.299%	Swiss-Prot	strong database homology
`F4IAL1`	Arabidopsis thaliana	O-fucosyltransferase 2	55.960%	Swiss-Prot	strong database homology
`Q9ZVF7`	Arabidopsis thaliana	Protein ESMERALDA 1	40.299%	Swiss-Prot	moderate database homology
`F4HXW9`	Arabidopsis thaliana	O-fucosyltransferase 4	39.014%	Swiss-Prot	moderate database homology

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