LXL04_027175 | RubberDandelionOmics

Gene overview

LXL04_027175

Reference: OH-1004 Chr: Chr06 Coordinates: 10228056-10230133 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1278 bp · LXL04_027175|LXL04_027175|OH1004|cDNA

ATGACCACCACGCACTACACGGCGGAGCATATCCCCGCCGCCGTCGACTCGGTGGTTTCTTCACCTCGCTCCGATCATCTCCCGGTGGACAGCAACCGCGTACACGATGAAACCACGGCACAAGCACGTGTCCGGTTCATGTGTAGTTTTGGGGGAAAGATATTACCCCGGCCTCATGACAACCAACTCCGGTATGTTGGCGGCGACACCCGCATAGTCACTGTCCTCCGCCACAACACCACCTTCTCCTCCCTACTCAA...

CDS

Download CDS FASTA

1278 bp · LXL04_027175|LXL04_027175|OH1004|CDS

ATGACCACCACGCACTACACGGCGGAGCATATCCCCGCCGCCGTCGACTCGGTGGTTTCTTCACCTCGCTCCGATCATCTCCCGGTGGACAGCAACCGCGTACACGATGAAACCACGGCACAAGCACGTGTCCGGTTCATGTGTAGTTTTGGGGGAAAGATATTACCCCGGCCTCATGACAACCAACTCCGGTATGTTGGCGGCGACACCCGCATAGTCACTGTCCTCCGCCACAACACCACCTTCTCCTCCCTACTCAA...

Protein

Download Protein FASTA

425 aa · LXL04_027175|LXL04_027175|OH1004|PROTEIN

MTTTHYTAEHIPAAVDSVVSSPRSDHLPVDSNRVHDETTAQARVRFMCSFGGKILPRPHDNQLRYVGGDTRIVTVLRHNTTFSSLLNKLSKLSGTSDISVKYQLPNEDLDALISVTGDEDVENMMDEYDRLAHNHKTGRLRIFLFPTDSSLSRASSISSLLDGSVKREHWFLDALNGGSALERGRSEVSSIISEVPDYLFGLDHPDDPKPKNRPLVNDNVSNSDPGSPTPRISSPYCSTSSALGPTVAPPVPNLRPVRTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027175`
TK1151 ID	TkA07G037150
OH-1004 ID	LXL04_027175
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027175

Location Chr06:10228056-10230133 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79570`	RAF-like protein kinase acting, together with RAF24, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At2g35050`	RAF-like protein kinase acting, together with RAF20, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At5g16220`	Collaboratively with SUB and QKY, regulates cell growth anisotropy during gynoecium development, thus linking together cell-cell communication and cellular growth.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027175 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010109 regulation of photosynthesis Biological Process

GO:0010114 response to red light Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G79570

ath:AT2G35050

ath:AT5G16220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.560

Rank 1 · LXL04_027175 · OH-1004

Cytoplasm0.383

Rank 2 · LXL04_027175 · OH-1004

Cell membrane0.201

Rank 3 · LXL04_027175 · OH-1004

Endoplasmic reticulum0.074

Rank 4 · LXL04_027175 · OH-1004

Lysosome / Vacuole0.028

Rank 5 · LXL04_027175 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00564.31PB159-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027175	`PF00564.31`	PB1	59	146	5.9e-18	65.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SAJ2`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 20	48.077%	Swiss-Prot	weak database homology
`O64768`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 24	41.481%	Swiss-Prot	weak database homology
`Q9LF06`	Arabidopsis thaliana	Protein PAL OF QUIRKY	34.831%	Swiss-Prot	weak database homology

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