LXL04_027173 | RubberDandelionOmics

Gene overview

LXL04_027173

Reference: OH-1004 Chr: Chr06 Coordinates: 10183188-10185392 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

765 bp · LXL04_027173|LXL04_027173|OH1004|cDNA

ATGGCGGATTTCGAGAAGCAGGTTGGtgcggcggtggcggtggtaGTTGAGGAGGAGAAAGAGCGATTAATTGAGCGGGTGCCGGCGTTGGATTTTGATTTGTTGTGTTCAGCGGTGGCGATGAAGACGAATCAAGGGAAATGGAGTAAATTGGAGGAAAATTACGAAGAAGATGGTGGAGAATTTGGAGGAGGTGTTTTTAGGATGTGGGAAGGTGATCTTTTCGATTGCTTTGATGATCGTAGAGTTGTTCTTCAATC...

CDS

Download CDS FASTA

765 bp · LXL04_027173|LXL04_027173|OH1004|CDS

ATGGCGGATTTCGAGAAGCAGGTTGGTGCGGCGGTGGCGGTGGTAGTTGAGGAGGAGAAAGAGCGATTAATTGAGCGGGTGCCGGCGTTGGATTTTGATTTGTTGTGTTCAGCGGTGGCGATGAAGACGAATCAAGGGAAATGGAGTAAATTGGAGGAAAATTACGAAGAAGATGGTGGAGAATTTGGAGGAGGTGTTTTTAGGATGTGGGAAGGTGATCTTTTCGATTGCTTTGATGATCGTAGAGTTGTTCTTCAATC...

Protein

Download Protein FASTA

254 aa · LXL04_027173|LXL04_027173|OH1004|PROTEIN

MADFEKQVGAAVAVVVEEEKERLIERVPALDFDLLCSAVAMKTNQGKWSKLEENYEEDGGEFGGGVFRMWEGDLFDCFDDRRVVLQSTFCPWYRFGENMRLAGFGSCFLQGFIYIILAGIALCNIVVFLVTKKHCFLYFGVLFALSLGTYLGFNRSKMRNKFNIKGSDGSLDDCVSHLICPCCTLAQESRTLEMNNVQDGTWHGRGDTMCIGTYVEGVKALELIPPTIVSIDSPKPYFSENTMVQDSHPSVWRQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027173`
TK1151 ID	TkA07G037120
OH-1004 ID	LXL04_027173
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027173

Location Chr06:10183188-10185392 (+)

Description Similar to PCR8: Protein PLANT CADMIUM RESISTANCE 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g52200`	May be involved in heavy metals transport.	No verified direct reference in this release
`At2g40935`	May be involved in cadmium resistance.	No verified direct reference in this release
`At3g18470`	May be involved in heavy metals transport.	No verified direct reference in this release
`At1g14870`	Zinc transporter acting in both zinc extrusion and long-distance zinc transport.	Arabidopsis PCR2 is a zinc exporter involved in both zinc extrusion and long-distance zinc transport.2010 · DOI: 10.1105/tpc.109.070185

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027173 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G14870

ath:AT1G52200

ath:AT2G40935

ath:AT3G18470

zma:100193499

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.494

Rank 1 · LXL04_027173 · OH-1004

Endoplasmic reticulum0.177

Rank 2 · LXL04_027173 · OH-1004

Lysosome / Vacuole0.138

Rank 3 · LXL04_027173 · OH-1004

Cytoplasm0.131

Rank 4 · LXL04_027173 · OH-1004

Nucleus0.106

Rank 5 · LXL04_027173 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04749.23PLAC870-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027173	`PF04749.23`	PLAC8	70	190	4.7e-22	79.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M815`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 8	29.870%	Swiss-Prot	weak database homology
`Q8S8T8`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 10	29.496%	Swiss-Prot	weak database homology
`Q9LS43`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 7	28.986%	Swiss-Prot	weak database homology
`Q9LQU4`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 2	28.571%	Swiss-Prot	weak database homology

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