LXL04_027172 | RubberDandelionOmics

Gene overview

LXL04_027172

Reference: OH-1004 Chr: Chr06 Coordinates: 10155000-10157665 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1581 bp · LXL04_027172|LXL04_027172|OH1004|cDNA

ATGGAAATCGGATCCTGTATGAGACTCCAAAACGGCAGCAGTCCAACATCATACTTAACTCCCGCAAGCTACTACCTCCATGACCAATCAATCCCAACCCAAAACCGTCCTTCTTCTTACGTGACTCTTCCTCGCAAGAATTTCACCTGCAAATCAACTTTAAAGGAAGCCAATAACAACATCGGAGCTCTAGAAAAGGTAGAAGTGAAGCCTTCTTCAGAGATGGAGCTTTCAAGTTTAACAGCCATAAGCCCTTTAGA...

CDS

Download CDS FASTA

1581 bp · LXL04_027172|LXL04_027172|OH1004|CDS

ATGGAAATCGGATCCTGTATGAGACTCCAAAACGGCAGCAGTCCAACATCATACTTAACTCCCGCAAGCTACTACCTCCATGACCAATCAATCCCAACCCAAAACCGTCCTTCTTCTTACGTGACTCTTCCTCGCAAGAATTTCACCTGCAAATCAACTTTAAAGGAAGCCAATAACAACATCGGAGCTCTAGAAAAGGTAGAAGTGAAGCCTTCTTCAGAGATGGAGCTTTCAAGTTTAACAGCCATAAGCCCTTTAGA...

Protein

Download Protein FASTA

526 aa · LXL04_027172|LXL04_027172|OH1004|PROTEIN

MEIGSCMRLQNGSSPTSYLTPASYYLHDQSIPTQNRPSSYVTLPRKNFTCKSTLKEANNNIGALEKVEVKPSSEMELSSLTAISPLDGRYRNSTKDLSPFLSEYGLIYYRTLVEIKWLLKLSQIPQVSEVPIFSNEAESKLQALIDEFSESDAIQVKNIEKTTNHDVKAVEYFLKTKCQEDQEIAKVLEFFHFGCTSEDINNLAHGLMLKESINTVVLPVMDDLIRKIYTMAKLYARIPMLSRTHGQTASPTTLGKEMVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027172`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_027172`
Location	Chr06:10155000-10157665 (+)
Description	Similar to purB: Adenylosuccinate lyase (Escherichia coli (strain K12)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027172` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006163 purine nucleotide metabolic process Biological Process GO:0006189 'de novo' IMP biosynthetic process Biological Process GO:0006974 DNA damage response Biological Process GO:0044208 'de novo' AMP biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity Molecular Function GO:0070626 (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity Molecular Function GO:0097216 guanosine tetraphosphate binding Molecular Function
KEGG gene cross-reference	ecc:c1510 ecj:JW1117 eco:b1131 ecoc:C3026_06805 hin:HI_0639 pae:PA2629 vco:VC0395_A0644 vcr:VC395_1141 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.953

Rank 1 · LXL04_027172 · OH-1004

Cytoplasm0.062

Rank 2 · LXL04_027172 · OH-1004

Peroxisome0.055

Rank 3 · LXL04_027172 · OH-1004

Mitochondrion0.042

Rank 4 · LXL04_027172 · OH-1004

Nucleus0.021

Rank 5 · LXL04_027172 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00206.26Lyase_1126-372 aa

PF08328.17ASL_C391-505 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027172	`PF00206.26`	Lyase_1	126	372	5.4e-48	164.7
LXL04_027172	`PF08328.17`	ASL_C	391	505	4.1e-50	169.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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