LXL04_027165 | RubberDandelionOmics

Gene overview

LXL04_027165

Reference: OH-1004 Chr: Chr06 Coordinates: 9933464-9939070 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2670 bp · LXL04_027165|LXL04_027165|OH1004|cDNA

ATGTCAAATATGAGAGCCAATATCACATTGACAATTGACAAGAACAAAATCAacaaaatcccaaaaacccgAATCAATGAACCAAATAAAGATTGGGGGAATCACACTTCTCTCTCAAAAATGAAAAGCCTCCATTATCGTGCCACGATTATAttctctctcttcttcttcttccctttTATCTCTCTAGCCGTTGATACCATCACACCCACAAAACCCCTCACCGTTAATCAAACTCTAGTGTCTGATGATGAAGTTTT...

CDS

Download CDS FASTA

2670 bp · LXL04_027165|LXL04_027165|OH1004|CDS

ATGTCAAATATGAGAGCCAATATCACATTGACAATTGACAAGAACAAAATCAACAAAATCCCAAAAACCCGAATCAATGAACCAAATAAAGATTGGGGGAATCACACTTCTCTCTCAAAAATGAAAAGCCTCCATTATCGTGCCACGATTATATTCTCTCTCTTCTTCTTCTTCCCTTTTATCTCTCTAGCCGTTGATACCATCACACCCACAAAACCCCTCACCGTTAATCAAACTCTAGTGTCTGATGATGAAGTTTT...

Protein

Download Protein FASTA

889 aa · LXL04_027165|LXL04_027165|OH1004|PROTEIN

MSNMRANITLTIDKNKINKIPKTRINEPNKDWGNHTSLSKMKSLHYRATIIFSLFFFFPFISLAVDTITPTKPLTVNQTLVSDDEVFEMGFFDPGNNNLYFGIWYKQIEPKTIVWVANRDNPITSSSGMLTIGDDRNIVVLNEAEIPVWSSNQSVPMVNTVAQLLDNGNFVLRAENDDNPDNYIWQSFDNPTDTLLPEMKLGWNRSTGQNRFLQSWKTSTDPGSGDYTFKMDTDGFPEIVLSRRGVETYRSGPWNGRRFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027165`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027165

Location Chr06:9933464-9939070 (-)

Description Similar to SD18: Receptor-like serine/threonine-protein kinase SD1-8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65800`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`UniProt: P0DH86`	Female specificity determinant of self-incompatibility.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027165 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0060320 rejection of self pollen Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

KEGG gene cross-reference

ath:AT1G65790

ath:AT1G65800

ath:AT4G21380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.862

Rank 1 · LXL04_027165 · OH-1004

Endoplasmic reticulum0.081

Rank 2 · LXL04_027165 · OH-1004

Cytoplasm0.072

Rank 3 · LXL04_027165 · OH-1004

Nucleus0.038

Rank 4 · LXL04_027165 · OH-1004

Lysosome / Vacuole0.025

Rank 5 · LXL04_027165 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin112-217 aa

PF00954.26S_locus_glycop249-357 aa

PF08276.18PAN_2379-444 aa

PF12398.14DUF3660526-561 aa

PF00069.32Pkinase572-774 aa

PF07714.24PK_Tyr_Ser-Thr575-839 aa

PF11883.14DUF3403844-889 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027165	`PF01453.31`	B_lectin	112	217	1.1e-38	132.6
LXL04_027165	`PF00954.26`	S_locus_glycop	249	357	6e-36	124.1
LXL04_027165	`PF08276.18`	PAN_2	379	444	3.7e-23	82.1
LXL04_027165	`PF12398.14`	DUF3660	526	561	1.2e-08	35.5
LXL04_027165	`PF00069.32`	Pkinase	572	774	1e-45	156.9
LXL04_027165	`PF07714.24`	PK_Tyr_Ser-Thr	575	839	2.1e-49	168.9
LXL04_027165	`PF11883.14`	DUF3403	844	889	1.1e-13	51.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81905`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-8	56.265%	Swiss-Prot	strong database homology
`Q9S972`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-6	53.864%	Swiss-Prot	strong database homology
`Q39086`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase SD1-7	52.913%	Swiss-Prot	strong database homology
`P0DH86`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SRK	50.769%	Swiss-Prot	strong database homology

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