LXL04_027116 | RubberDandelionOmics

Gene overview

LXL04_027116

Reference: OH-1004 Chr: Chr06 Coordinates: 9181126-9187574 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4059 bp · LXL04_027116|LXL04_027116|OH1004|cDNA

ATGTCGTGGGGATTAGGATGGAAGAGGCCATCTGATGTGTTTCATCTGTCTTTGTATTATGGTTCGGATGAGGCATTAGATGATCAGACTCGTTCTTCTTCGCCGCCACCACAATCATCATCGGGATCATCGTGGGCACCGCCAGATAATATTAACAATTCTAATAATCCCGAGTTAGGGTTTCGGATCGATCTCGATTGGAATGCCGGCGATGAAGAAGATCAGGTTACTTTGAGACTTCAGTCTCAGGTTATGGTGGC...

CDS

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4059 bp · LXL04_027116|LXL04_027116|OH1004|CDS

ATGTCGTGGGGATTAGGATGGAAGAGGCCATCTGATGTGTTTCATCTGTCTTTGTATTATGGTTCGGATGAGGCATTAGATGATCAGACTCGTTCTTCTTCGCCGCCACCACAATCATCATCGGGATCATCGTGGGCACCGCCAGATAATATTAACAATTCTAATAATCCCGAGTTAGGGTTTCGGATCGATCTCGATTGGAATGCCGGCGATGAAGAAGATCAGGTTACTTTGAGACTTCAGTCTCAGGTTATGGTGGC...

Protein

Download Protein FASTA

1352 aa · LXL04_027116|LXL04_027116|OH1004|PROTEIN

MSWGLGWKRPSDVFHLSLYYGSDEALDDQTRSSSPPPQSSSGSSWAPPDNINNSNNPELGFRIDLDWNAGDEEDQVTLRLQSQVMVALPLPQDTVVIRLLESDDSAQVKPGEEVGVSGGANGPGNLVSVDMKVVKQREPLRAVAMSRVVGSGQQNDGMGVLTKLLKSDFPSESVPGHTDGPRVETCPDHWINVTVVSLYNCGLLTLPLEVTKLPLLEKLFLDNNKLTVLPPELGVLKNLKVLSVDYNMLVSVPAELRQCL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027116`
TK1151 ID	TkA07G033670
OH-1004 ID	LXL04_027116
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.938 / OH-1004 49.186 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027116

Location Chr06:9181126-9187574 (-)

Description Similar to PLA1: Phospholipase A I

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61850`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	AtPLAI is an acyl hydrolase involved in basal jasmonic acid production and Arabidopsis resistance to Botrytis cinerea.2007 · DOI: 10.1074/jbc.m700405200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027116 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0009620 response to fungus Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0019369 arachidonate metabolic process Biological Process

GO:0032048 cardiolipin metabolic process Biological Process

GO:0034638 phosphatidylcholine catabolic process Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043651 linoleic acid metabolic process Biological Process

GO:0046338 phosphatidylethanolamine catabolic process Biological Process

GO:0050482 arachidonate secretion Biological Process

GO:0050832 defense response to fungus Biological Process

KEGG gene cross-reference

hsa:50640

mmu:67452

ocu:100328577

rno:314075

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.471

Rank 1 · LXL04_027116 · OH-1004

Nucleus0.275

Rank 2 · LXL04_027116 · OH-1004

Mitochondrion0.139

Rank 3 · LXL04_027116 · OH-1004

Cell membrane0.121

Rank 4 · LXL04_027116 · OH-1004

Golgi apparatus0.107

Rank 5 · LXL04_027116 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_8215-272 aa

PF00514.30Arm376-414 aa

PF01734.28Patatin560-798 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027116	`PF13855.13`	LRR_8	215	272	2e-08	34.6
LXL04_027116	`PF00514.30`	Arm	376	414	2e-06	28.3
LXL04_027116	`PF01734.28`	Patatin	560	798	1.7e-20	74.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HX15`	Arabidopsis thaliana	Phospholipase A I	67.271%	Swiss-Prot	strong database homology

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