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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_027010
Reference: OH-1004 Chr: Chr06 Coordinates: 6901096-6902979 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1884 bp · LXL04_027010|LXL04_027010|OH1004|cDNA

ATGCTCACTTTCTCCAGTTCGTCAAAGGCTATACCCATCTTCTTCATCCCAACAAGAAACCATGAACTTCTCACCCACCAATCAAGATCCATATCAATAACCTCCCCTGTTCCGACCCATGACCAGATATCCCACCTCATTCTCGATCAAAAATCCGCATCTGAAGCTCTCGATACTTTCCGATGGGCGTCCAAGCTCCCCCATTTCACCCACACCCAATCCACCTACAGATCCCTAGTCCACAAGCTCTGTACTTTCCG...

CDS

Download CDS FASTA

1884 bp · LXL04_027010|LXL04_027010|OH1004|CDS

ATGCTCACTTTCTCCAGTTCGTCAAAGGCTATACCCATCTTCTTCATCCCAACAAGAAACCATGAACTTCTCACCCACCAATCAAGATCCATATCAATAACCTCCCCTGTTCCGACCCATGACCAGATATCCCACCTCATTCTCGATCAAAAATCCGCATCTGAAGCTCTCGATACTTTCCGATGGGCGTCCAAGCTCCCCCATTTCACCCACACCCAATCCACCTACAGATCCCTAGTCCACAAGCTCTGTACTTTCCG...

Protein

Download Protein FASTA

627 aa · LXL04_027010|LXL04_027010|OH1004|PROTEIN

MLTFSSSSKAIPIFFIPTRNHELLTHQSRSISITSPVPTHDQISHLILDQKSASEALDTFRWASKLPHFTHTQSTYRSLVHKLCTFRQFDTVHQLLDEMPTLIGSPPDDTIFTTIIRGLGNARMVKQAINILDLVSRFNEKPTLKIYNSILDVLIKEDIDIARAFYRRKMMACGVKGDIYTFGILTKGLCMTNRISDAFKLLQFMKRNNIPPNIIIYNTLIHALCKNGKLGVGRARSLMKEITNPNSVTFNILITAYCKQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_027010
TK1151 IDTkA07G024560
OH-1004 IDLXL04_027010
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 56.487 / OH-1004 45.136
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_027010
LocationChr06:6901096-6902979 (-)
DescriptionSimilar to At2g17525: Pentatricopeptide repeat-containing protein At2g17525, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17525 Pentatricopeptide repeat-containing protein At2g17525, mitochondrial. No verified direct reference in this release
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At3g48810 Pentatricopeptide repeat-containing protein At3g48810. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027010 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G17525
ath:AT3G53700
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.825
Rank 1 · LXL04_027010 · OH-1004
Plastid0.071
Rank 2 · LXL04_027010 · OH-1004
Nucleus0.052
Rank 3 · LXL04_027010 · OH-1004
Cytoplasm0.029
Rank 4 · LXL04_027010 · OH-1004
Cell membrane0.009
Rank 5 · LXL04_027010 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812.13PPR_3168-226 aa
PF12854.14PPR_1174-206 aa
PF13041.13PPR_2178-226 aa
PF12854.14PPR_1209-230 aa
PF13041.13PPR_2212-230 aa
PF23276.3TPR_24238-332 aa
PF12854.14PPR_1244-272 aa
PF13041.13PPR_2245-294 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_027010PF13812.13PPR_31682261.8e-41140.7
LXL04_027010PF12854.14PPR_11742064.3e-87286.2
LXL04_027010PF13041.13PPR_21782261.3e-84278.9
LXL04_027010PF12854.14PPR_12092304.3e-87286.2
LXL04_027010PF13041.13PPR_22122301.3e-84278.9
LXL04_027010PF23276.3TPR_242383325.1e-29101.6
LXL04_027010PF12854.14PPR_12442724.3e-87286.2
LXL04_027010PF13041.13PPR_22452941.3e-84278.9
LXL04_027010PF12854.14PPR_12773074.3e-87286.2
LXL04_027010PF13041.13PPR_22803291.3e-84278.9
LXL04_027010PF13812.13PPR_33103591.8e-41140.7
LXL04_027010PF12854.14PPR_13113444.3e-87286.2
LXL04_027010PF13041.13PPR_23163631.3e-84278.9
LXL04_027010PF01535.27PPR3183487.5e-70227.2
LXL04_027010PF12854.14PPR_13463794.3e-87286.2
LXL04_027010PF01535.27PPR3543837.5e-70227.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84VG6Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g17525, mitochondrial51.834%Swiss-Protstrong database homology
Q9FMF6Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g64320, mitochondrial26.708%Swiss-Protweak database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic26.060%Swiss-Protweak database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971024.468%Swiss-Protweak database homology
Q9M302Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g4881026.129%Swiss-Protweak database homology

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