LXL04_026957 | RubberDandelionOmics

Gene overview

LXL04_026957

Reference: OH-1004 Chr: Chr06 Coordinates: 5876683-5877840 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1158 bp · LXL04_026957|LXL04_026957|OH1004|cDNA

ATGTATGGTAGATCAGGTCTTGACCGTTTCAAAAAGGCACAAACCCTAGAACCATTCTCAGTAGCAAAAAAACCACAATTACATTCCCATTCTGATATCCCCAATCACCAAAACACTCATCAACCTTCTCAAAAACCAACAAACAATGATCCAAAACACCTTCCAACAACCACCACAACCCCACACCACCTAACACAAACTGGAGCTGGACAGTCCACCTGGCAACCACCCGATTGGGCCATTGAACCCCGCCCAGGTGT...

CDS

Download CDS FASTA

1158 bp · LXL04_026957|LXL04_026957|OH1004|CDS

ATGTATGGTAGATCAGGTCTTGACCGTTTCAAAAAGGCACAAACCCTAGAACCATTCTCAGTAGCAAAAAAACCACAATTACATTCCCATTCTGATATCCCCAATCACCAAAACACTCATCAACCTTCTCAAAAACCAACAAACAATGATCCAAAACACCTTCCAACAACCACCACAACCCCACACCACCTAACACAAACTGGAGCTGGACAGTCCACCTGGCAACCACCCGATTGGGCCATTGAACCCCGCCCAGGTGT...

Protein

Download Protein FASTA

385 aa · LXL04_026957|LXL04_026957|OH1004|PROTEIN

MYGRSGLDRFKKAQTLEPFSVAKKPQLHSHSDIPNHQNTHQPSQKPTNNDPKHLPTTTTTPHHLTQTGAGQSTWQPPDWAIEPRPGVYYLDVLKDSELLDKINLDKRKHIFGRQLQTCDFVLDHPSVSRQHAAVVPHKNGSIFVIDLGSAHGTFVANERLQKDSPIELEIGQSLRFAASTRVYILKKDNSALFPHPPPSQITLPPPPNPLDEEAVLSYNTFINRYNLSKSQDSQETERPVKRAKRAKVSFRDQVGGELVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026957`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026957

Location Chr06:5876683-5877840 (+)

Description Similar to At5g47790: Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47790`	Inhibitor of protein-phosphatase 1 (PP1).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026957 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006401 RNA catabolic process Biological Process

GO:0008283 cell population proliferation Biological Process

GO:0008380 RNA splicing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G47790

bta:282319

hsa:22950

hsa:5511

mmu:100336

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.819

Rank 1 · LXL04_026957 · OH-1004

Cytoplasm0.272

Rank 2 · LXL04_026957 · OH-1004

Cell membrane0.029

Rank 3 · LXL04_026957 · OH-1004

Mitochondrion0.028

Rank 4 · LXL04_026957 · OH-1004

Endoplasmic reticulum0.022

Rank 5 · LXL04_026957 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00498.32FHA110-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026957	`PF00498.32`	FHA	110	176	1.6e-18	67.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIK2`	Arabidopsis thaliana	Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog	56.818%	Swiss-Prot	strong database homology

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