Gene Card
Gene overview
cDNA / CDS / Protein Sequences
660 bp · LXL04_026890|LXL04_026890|OH1004|cDNA
ATGGCAACATCATCATCCCTTCCCGCCATTTCCAGCACCTTCACCCTTTTCAGTTCCCAAATTCAACCAGCAAAATCCCACCGAACCCTAACCCTAACCATCCGCTCCTCACTCACATCACAACCTCTCACCTCCGCCAAATCTCACCTCCTCCATCTAATTTCCGACCAAAACAGAGGCATCGCCACCCAATCCGACCCCCAAAAGCTGTCGCAGATCACCGACGCCATCGACTCCATCGCGTCACTCAACCGCGACCA...
660 bp · LXL04_026890|LXL04_026890|OH1004|CDS
ATGGCAACATCATCATCCCTTCCCGCCATTTCCAGCACCTTCACCCTTTTCAGTTCCCAAATTCAACCAGCAAAATCCCACCGAACCCTAACCCTAACCATCCGCTCCTCACTCACATCACAACCTCTCACCTCCGCCAAATCTCACCTCCTCCATCTAATTTCCGACCAAAACAGAGGCATCGCCACCCAATCCGACCCCCAAAAGCTGTCGCAGATCACCGACGCCATCGACTCCATCGCGTCACTCAACCGCGACCA...
Protein
Download Protein FASTA219 aa · LXL04_026890|LXL04_026890|OH1004|PROTEIN
MATSSSLPAISSTFTLFSSQIQPAKSHRTLTLTIRSSLTSQPLTSAKSHLLHLISDQNRGIATQSDPQKLSQITDAIDSIASLNRDQITTNNSLSGTWRLLWTTEKEQLFIIKNASFFGTKAGDVLQVIDVETRKLNNVITFPPDGVFFVRSDMEISSSLRVNFRFTSAVLRGKEWEFPLPPFGQGWFDSVYLDDDIRIAKDIRGDYLVVDRAPYQWKE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026890 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026890 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:4779763-4780783 (+) | ||||||||||||
| Description | Similar to PAP11: Probable plastid-lipid-associated protein 11, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0010236 plastoquinone biosynthetic process Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT4G00030 dosa:Os04g0422000 osa:4335835 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04755.19PAP_fibrillin45-210 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026890 | PF04755.19 | PAP_fibrillin | 45 | 210 | 2.8e-39 | 135.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.