LXL04_026849 | RubberDandelionOmics

Gene overview

LXL04_026849

Reference: OH-1004 Chr: Chr06 Coordinates: 3742861-3753248 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3750 bp · LXL04_026849|LXL04_026849|OH1004|cDNA

ATGGCGGCAAGAGAAGCAGAAGATGTAACAAAACCTTCGGTGACTGGTGAAGAATTGGAAGACGACGACGAACACGATTCAAAAGAGGCAGTGTTTCAGAGATACTTTTTACTAGAATGGAAGGTCGTCAAGTGTATCCTCGACGACATCATTTCGAATGGCCGAGTTGTAGATCTCTCCTCGGTCCACAAGATCCGATCAATCGTGGACAAATATCAGGAGCAAGGACAACTGTTAGAACCATATCTGGAGACCATAAT...

CDS

Download CDS FASTA

3750 bp · LXL04_026849|LXL04_026849|OH1004|CDS

ATGGCGGCAAGAGAAGCAGAAGATGTAACAAAACCTTCGGTGACTGGTGAAGAATTGGAAGACGACGACGAACACGATTCAAAAGAGGCAGTGTTTCAGAGATACTTTTTACTAGAATGGAAGGTCGTCAAGTGTATCCTCGACGACATCATTTCGAATGGCCGAGTTGTAGATCTCTCCTCGGTCCACAAGATCCGATCAATCGTGGACAAATATCAGGAGCAAGGACAACTGTTAGAACCATATCTGGAGACCATAAT...

Protein

Download Protein FASTA

1249 aa · LXL04_026849|LXL04_026849|OH1004|PROTEIN

MAAREAEDVTKPSVTGEELEDDDEHDSKEAVFQRYFLLEWKVVKCILDDIISNGRVVDLSSVHKIRSIVDKYQEQGQLLEPYLETIISPLMLIVRSKTLEQGVKSNDLLEVIKPLCIIVYSLVTVCGYKAVIRFFPHQVSDLEPAVSLLEKCHGTTTGTTLRQESTGEMETKCVILLWLSILVLVPFDISSVDTSIANTHSVNANEPPPLVSRILEISKEYLSNAGPMQTIAGLLLSKLLTRPDMLPAYTSFIEWTHGVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026849`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026849

Location Chr06:3742861-3753248 (+)

Description Similar to TFCD: Tubulin-folding cofactor D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g60740`	Regulates microtubule function in seed development.	The titan mutants of Arabidopsis are disrupted in mitosis and cell cycle control during seed development.1998 · DOI: 10.1046/j.1365-313x.1998.00268.x

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026849 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0006457 protein folding Biological Process

GO:0007017 microtubule-based process Biological Process

GO:0007021 tubulin complex assembly Biological Process

GO:0007023 post-chaperonin tubulin folding pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010812 negative regulation of cell-substrate adhesion Biological Process

GO:0031115 negative regulation of microtubule polymerization Biological Process

GO:0034333 adherens junction assembly Biological Process

GO:0070830 bicellular tight junction assembly Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G60740

bta:281515

gga:417334

hsa:6904

mmu:108903

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.503

Rank 1 · LXL04_026849 · OH-1004

Nucleus0.493

Rank 2 · LXL04_026849 · OH-1004

Golgi apparatus0.066

Rank 3 · LXL04_026849 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_026849 · OH-1004

Endoplasmic reticulum0.048

Rank 5 · LXL04_026849 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23579.2ARM_TBCD69-258 aa

PF25767.2ARM_TBCD_2nd317-561 aa

PF20926.4Htt_N-HEAT_1700-792 aa

PF12612.14TFCD_C930-1118 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026849	`PF23579.2`	ARM_TBCD	69	258	2e-55	187.9
LXL04_026849	`PF25767.2`	ARM_TBCD_2nd	317	561	2.5e-109	365.1
LXL04_026849	`PF20926.4`	Htt_N-HEAT_1	700	792	2.4e-07	31.9
LXL04_026849	`PF12612.14`	TFCD_C	930	1118	3e-55	187.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L5R3`	Arabidopsis thaliana	Tubulin-folding cofactor D	65.094%	Swiss-Prot	strong database homology

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