Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1008 bp · LXL04_026827|LXL04_026827|OH1004|cDNA
ATGGCGAAAGGAAATGTTTGTGTAACCGGCGGTACGGGGTACTTGGCTTCATGGATGATCAAGACGTTACTGGAAGAAGGATATTTTGTGAATGCTACCATCAGATTTGATTCAGGCTCAATGGAAGATGTGAGCGCCATCATGGCCTTACCGGGGGCACCAGAGAGGATGAAGATTTTCGACGCGGATCTAAACAAACCAGAGACATTTGAGGCACCAATCAAAGGTTGCATTGGGGTGTTCCATGTTGCACATCCAAT...
1008 bp · LXL04_026827|LXL04_026827|OH1004|CDS
ATGGCGAAAGGAAATGTTTGTGTAACCGGCGGTACGGGGTACTTGGCTTCATGGATGATCAAGACGTTACTGGAAGAAGGATATTTTGTGAATGCTACCATCAGATTTGATTCAGGCTCAATGGAAGATGTGAGCGCCATCATGGCCTTACCGGGGGCACCAGAGAGGATGAAGATTTTCGACGCGGATCTAAACAAACCAGAGACATTTGAGGCACCAATCAAAGGTTGCATTGGGGTGTTCCATGTTGCACATCCAAT...
Protein
Download Protein FASTA335 aa · LXL04_026827|LXL04_026827|OH1004|PROTEIN
MAKGNVCVTGGTGYLASWMIKTLLEEGYFVNATIRFDSGSMEDVSAIMALPGAPERMKIFDADLNKPETFEAPIKGCIGVFHVAHPIDDEGKESEQVITERAVKGSLGILQACIDSKTVKKVIYTSSACAVVFNDKLSNEILDEESWSNIDLIRTIDKQFGGSYFISKTMTEKTTLEFAEEKGIDVVTVIPTFVSGPFVGTHCPRSVRGSMALILVVCQTYLTGDANIKMLKKTPFVHVDDVARTHIHLLEYPNAKGRYI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026827 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026827 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:3448775-3450551 (-) | |||||||||
| Description | Similar to Vestitone reductase | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0009646 response to absence of light Biological Process GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0009820 alkaloid metabolic process Biological Process GO:0010422 regulation of brassinosteroid biosynthetic process Biological Process GO:0016131 brassinosteroid metabolic process Biological Process GO:0016132 brassinosteroid biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0042406 extrinsic component of endoplasmic reticulum membrane Cellular Component GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function | |||||||||
| KEGG gene cross-reference | ag:AAB41550 ag:AFB74619 ath:AT2G45400 ath:AT5G42800 mdm:103450464 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01370.28Epimerase6-256 aaPF01073.263Beta_HSD8-197 aaPF07993.19NAD_binding_48-244 aaPF16363.12GDP_Man_Dehyd8-275 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026827 | PF01370.28 | Epimerase | 6 | 256 | 3.4e-21 | 76.5 |
| LXL04_026827 | PF01073.26 | 3Beta_HSD | 8 | 197 | 1.1e-14 | 54.9 |
| LXL04_026827 | PF07993.19 | NAD_binding_4 | 8 | 244 | 5.7e-10 | 39.5 |
| LXL04_026827 | PF16363.12 | GDP_Man_Dehyd | 8 | 275 | 5.7e-09 | 36.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.