LXL04_026804 | RubberDandelionOmics

Gene overview

LXL04_026804

Reference: OH-1004 Chr: Chr06 Coordinates: 3147919-3150614 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2169 bp · LXL04_026804|LXL04_026804|OH1004|cDNA

ATGTCAACACTGCAACCGACGTTACCGGAGTTTCCATCGGATTTGCCACCGCCGGCACCGCCTTATAACCACAGTCATACTCATCATCACCATGGATTAACCGTTTTACATTCGGTGCTCGCCGGAGTTTTGGTGTTTGTAATCTTCATAGTTTTTGCAATTGCATATAGGAAACTTTCACGGAAACGTACGGTTCCTGCGGATCTGAAGTCTCCACCACCGCAGCTGAAGCCGCAACAGCTACAGGAGTTTTCGTATAA...

CDS

Download CDS FASTA

2169 bp · LXL04_026804|LXL04_026804|OH1004|CDS

ATGTCAACACTGCAACCGACGTTACCGGAGTTTCCATCGGATTTGCCACCGCCGGCACCGCCTTATAACCACAGTCATACTCATCATCACCATGGATTAACCGTTTTACATTCGGTGCTCGCCGGAGTTTTGGTGTTTGTAATCTTCATAGTTTTTGCAATTGCATATAGGAAACTTTCACGGAAACGTACGGTTCCTGCGGATCTGAAGTCTCCACCACCGCAGCTGAAGCCGCAACAGCTACAGGAGTTTTCGTATAA...

Protein

Download Protein FASTA

722 aa · LXL04_026804|LXL04_026804|OH1004|PROTEIN

MSTLQPTLPEFPSDLPPPAPPYNHSHTHHHHGLTVLHSVLAGVLVFVIFIVFAIAYRKLSRKRTVPADLKSPPPQLKPQQLQEFSYNVLRRATSSFAVSNRLGQGGFGSVFKGVLPSGKEIAVKLMNVSGSLQGEREFHNELSLSARISGARGAHSGHVISVLGFSSDENRRRRKKMLIVYEYMQNGSLQDALLYRKCPELMDWKIRFMILLDVAKGVDFLHFSCDPPIVHCDIKPSNVLLDCNFNAKVADFGLARVLGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026804`
TK1151 ID	TkA07G008770
OH-1004 ID	LXL04_026804
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 94.737 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026804

Location Chr06:3147919-3150614 (-)

Description Similar to At2g45590: Receptor-like serine/threonine-protein kinase At2g45590

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45590`	Receptor-like serine/threonine-protein kinase At2g45590.	No verified direct reference in this release
`At4g25390`	Receptor-like serine/threonine-protein kinase At4g25390.	No verified direct reference in this release
`At1g80870`	Putative receptor-like protein kinase At1g80870.	No verified direct reference in this release
`At1g49270`	Proline-rich receptor-like protein kinase PERK7.	No verified direct reference in this release
`At1g06840`	Probable LRR receptor-like serine/threonine-protein kinase At1g06840.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026804 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G49270

ath:AT1G80870

ath:AT2G45590

ath:AT4G25390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.668

Rank 1 · LXL04_026804 · OH-1004

Nucleus0.237

Rank 2 · LXL04_026804 · OH-1004

Cytoplasm0.198

Rank 3 · LXL04_026804 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_026804 · OH-1004

Golgi apparatus0.029

Rank 5 · LXL04_026804 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase97-262 aa

PF07714.24PK_Tyr_Ser-Thr98-262 aa

PF00069.32Pkinase539-651 aa

PF07714.24PK_Tyr_Ser-Thr541-652 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026804	`PF00069.32`	Pkinase	97	262	3e-36	125.9
LXL04_026804	`PF07714.24`	PK_Tyr_Ser-Thr	98	262	3.4e-31	109.2
LXL04_026804	`PF00069.32`	Pkinase	539	651	3e-36	125.9
LXL04_026804	`PF07714.24`	PK_Tyr_Ser-Thr	541	652	3.4e-31	109.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64639`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase At2g45590	50.761%	Swiss-Prot	strong database homology
`Q9STJ8`	Arabidopsis thaliana	Receptor-like serine/threonine-protein kinase At4g25390	45.507%	Swiss-Prot	moderate database homology
`Q9SAH3`	Arabidopsis thaliana	Putative receptor-like protein kinase At1g80870	34.615%	Swiss-Prot	moderate database homology
`Q9XI96`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK7	47.701%	Swiss-Prot	weak database homology
`C0LGD7`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	40.435%	Swiss-Prot	weak database homology

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