LXL04_026791 | RubberDandelionOmics

Gene overview

LXL04_026791

Reference: OH-1004 Chr: Chr06 Coordinates: 2924430-2925818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

489 bp · LXL04_026791|LXL04_026791|OH1004|cDNA

ATGGCAGCAAGGGGAGGAGAAGGGCAAAgaagaggaggaggaggaggaagaCCTATGCCACCGTCGGCAAGAGGACCACCTGGCCCTCCTCTCCACGGTAAACCCGGGCCTCGATTCGAACCAGTCGACCGCGAAAAGACTTGTCCATTGCTACTTCGAGTTTTCACCAAGATTGGTGGTCATCACAACCAGTCAGAATTTGCAGTTAGGGGAAAAGAGCCTAAAGATGAAGTCCAAATATACACATGGATGGATGCTAC...

CDS

Download CDS FASTA

489 bp · LXL04_026791|LXL04_026791|OH1004|CDS

ATGGCAGCAAGGGGAGGAGAAGGGCAAAGAAGAGGAGGAGGAGGAGGAAGACCTATGCCACCGTCGGCAAGAGGACCACCTGGCCCTCCTCTCCACGGTAAACCCGGGCCTCGATTCGAACCAGTCGACCGCGAAAAGACTTGTCCATTGCTACTTCGAGTTTTCACCAAGATTGGTGGTCATCACAACCAGTCAGAATTTGCAGTTAGGGGAAAAGAGCCTAAAGATGAAGTCCAAATATACACATGGATGGATGCTAC...

Protein

Download Protein FASTA

162 aa · LXL04_026791|LXL04_026791|OH1004|PROTEIN

MAARGGEGQRRGGGGGRPMPPSARGPPGPPLHGKPGPRFEPVDREKTCPLLLRVFTKIGGHHNQSEFAVRGKEPKDEVQIYTWMDATLRELTDLVKEVAPEARRRDAMLSFAFVYPTKTGHFAVKEVGKTLSYPNARRPDDGSKALGSLSFEIGDYLDVAIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026791`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026791

Location Chr06:2924430-2925818 (-)

Description Similar to At2g45640: Histone deacetylase complex subunit SAP18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45640`	Links the histone deacetylase complex to transcriptional repressors bound to chromatin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026791 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006397 mRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048025 negative regulation of mRNA splicing, via spliceosome Biological Process

GO:0050684 regulation of mRNA processing Biological Process

GO:0000118 histone deacetylase complex Cellular Component

KEGG gene cross-reference

ath:AT2G45640

bta:615692

hsa:10284

mmu:20220

pon:100190849

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.675

Rank 1 · LXL04_026791 · OH-1004

Cytoplasm0.219

Rank 2 · LXL04_026791 · OH-1004

Endoplasmic reticulum0.144

Rank 3 · LXL04_026791 · OH-1004

Cell membrane0.110

Rank 4 · LXL04_026791 · OH-1004

Golgi apparatus0.054

Rank 5 · LXL04_026791 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06487.19SAP1842-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026791	`PF06487.19`	SAP18	42	161	2e-40	138.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O64644`	Arabidopsis thaliana	Histone deacetylase complex subunit SAP18	73.228%	Swiss-Prot	strong database homology

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