LXL04_026723 | RubberDandelionOmics

Gene overview

LXL04_026723

Reference: OH-1004 Chr: Chr06 Coordinates: 1986849-1991104 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1651 bp · LXL04_026723|LXL04_026723|OH1004|cDNA

gagagaTAAAATGTCGTTGCCGAAGCCGGAATTGGGTGAGAAGGCGTTCCCGCCGATCTCAAAATGTGATATCTCCGCCATCAACCGCCGATCAGTGGCCGCGGATCTCGATGGAACTCTGTTAAAAGCGACCTCCGCTTTTCCATACTACATGCTTGTAGCGATCGAGGCTGGTAGCCTCCTTCGTGGCCTTGCTCTGTTACTTTCGTTTCCGATAGTTGCTGTAGCTTACATCTTCATTTCGGAGGCTTTAGCTATAC...

CDS

Download CDS FASTA

1641 bp · LXL04_026723|LXL04_026723|OH1004|CDS

ATGTCGTTGCCGAAGCCGGAATTGGGTGAGAAGGCGTTCCCGCCGATCTCAAAATGTGATATCTCCGCCATCAACCGCCGATCAGTGGCCGCGGATCTCGATGGAACTCTGTTAAAAGCGACCTCCGCTTTTCCATACTACATGCTTGTAGCGATCGAGGCTGGTAGCCTCCTTCGTGGCCTTGCTCTGTTACTTTCGTTTCCGATAGTTGCTGTAGCTTACATCTTCATTTCGGAGGCTTTAGCTATACAGATGTTGAT...

Protein

Download Protein FASTA

546 aa · LXL04_026723|LXL04_026723|OH1004|PROTEIN

MSLPKPELGEKAFPPISKCDISAINRRSVAADLDGTLLKATSAFPYYMLVAIEAGSLLRGLALLLSFPIVAVAYIFISEALAIQMLIFISFSGLKVKDIELASRAVLPRFYAADVRSDSFEVFDKCERKVVVTANPTVMVDAFVKEYLGGEKVLGTEIEVNEKTKRATGFVKAPGVLVGKWKKLAILKEFGDDTPDIGLGDRKSDHDFMSVCKAAYMVPKDESAKILPRDSLKTRLIFHDGRLVQRPTPLNALITYTWLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026723`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026723

Location Chr06:1986849-1991104 (-)

Description Similar to GPAT4: Glycerol-3-phosphate 2-O-acyltransferase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q5XF03`	Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis.	No verified direct reference in this release
`At1g01610`	Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis.	A distinct type of glycerol-3-phosphate acyltransferase with sn-2 preference and phosphatase activity producing 2-monoacylglycerol.2010 · DOI: 10.1073/pnas.0914149107
`At2g38110`	Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis.	A distinct type of glycerol-3-phosphate acyltransferase with sn-2 preference and phosphatase activity producing 2-monoacylglycerol.2010 · DOI: 10.1073/pnas.0914149107

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026723 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009908 flower development Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0016024 CDP-diacylglycerol biosynthetic process Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0046486 glycerolipid metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004366 glycerol-3-phosphate O-acyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01610

ath:AT2G38110

ath:AT4G00400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.500

Rank 1 · LXL04_026723 · OH-1004

Golgi apparatus0.170

Rank 2 · LXL04_026723 · OH-1004

Cell membrane0.109

Rank 3 · LXL04_026723 · OH-1004

Nucleus0.075

Rank 4 · LXL04_026723 · OH-1004

Cytoplasm0.072

Rank 5 · LXL04_026723 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23270.2HAD_RAM2_N29-218 aa

PF12710.14HAD30-209 aa

PF01553.27Acyltransferase308-407 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026723	`PF23270.2`	HAD_RAM2_N	29	218	6.4e-62	209.3
LXL04_026723	`PF12710.14`	HAD	30	209	7.9e-21	76.0
LXL04_026723	`PF01553.27`	Acyltransferase	308	407	6.8e-09	36.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q5XF03`	Arabidopsis thaliana	Probable glycerol-3-phosphate acyltransferase 8	75.952%	Swiss-Prot	strong database homology
`Q9LMM0`	Arabidopsis thaliana	Glycerol-3-phosphate 2-O-acyltransferase 4	76.541%	Swiss-Prot	strong database homology
`O80437`	Arabidopsis thaliana	Glycerol-3-phosphate 2-O-acyltransferase 6	63.544%	Swiss-Prot	strong database homology

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