LXL04_026588 | RubberDandelionOmics

Gene overview

LXL04_026588

Reference: OH-1004 Chr: Chr05 Coordinates: 128949026-128949400 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

375 bp · LXL04_026588|LXL04_026588|OH1004|cDNA

ATGGCATCAAAGACCAATACTCTTCTAGCTTTCTTTCTGGCACTCAACCTTGTTTTCTTTGCAGTAGCAAGTGGTTGCAGCACCTGCCCTGGCCCTACCCCAAAACGAAAGCCATCAACCTGTCCCAAAGACACCCTCAAACTTGGTGTGTGCGCTAATGTTCTTGGCAGTTTACTTGGTCTTGTCGTTGGGAACCCACCAGTAAAGCCTTGTTGTAGCCTCATCCAAGGCCTTGTTGATCTTGAGGCGGCTGTTTGCCT...

CDS

Download CDS FASTA

375 bp · LXL04_026588|LXL04_026588|OH1004|CDS

ATGGCATCAAAGACCAATACTCTTCTAGCTTTCTTTCTGGCACTCAACCTTGTTTTCTTTGCAGTAGCAAGTGGTTGCAGCACCTGCCCTGGCCCTACCCCAAAACGAAAGCCATCAACCTGTCCCAAAGACACCCTCAAACTTGGTGTGTGCGCTAATGTTCTTGGCAGTTTACTTGGTCTTGTCGTTGGGAACCCACCAGTAAAGCCTTGTTGTAGCCTCATCCAAGGCCTTGTTGATCTTGAGGCGGCTGTTTGCCT...

Protein

Download Protein FASTA

124 aa · LXL04_026588|LXL04_026588|OH1004|PROTEIN

MASKTNTLLAFFLALNLVFFAVASGCSTCPGPTPKRKPSTCPKDTLKLGVCANVLGSLLGLVVGNPPVKPCCSLIQGLVDLEAAVCLCTAIKANVLGINLNVPLSLSLLLNVCGKKVPKNFKCA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026588`
TK1151 ID	TkA06G003160
OH-1004 ID	LXL04_026588
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	74.500
Protein coverage (%)	TK1151 94.444 / OH-1004 81.452 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026588

Location Chr05:128949026-128949400 (+)

Description Similar to EARLI1: Lipid transfer protein EARLI 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12480`	Probable lipid transfer protein (LTP).	Cold responsive EARLI1 type HyPRPs improve freezing survival of yeast cells and form higher order complexes in plants.2007 · DOI: 10.1007/s00425-007-0611-2 The HyPRP gene EARLI1 has an auxiliary role for germinability and early seedling development under low temperature and salt stress conditions in Arabidopsis thaliana.2011 · DOI: 10.1007/s00425-011-1425-9 Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana.2011 · DOI: 10.1111/j.1438-8677.2010.00428.x Expression of recombinant EARLI1, a hybrid proline-rich protein of Arabidopsis, in Escherichia coli and its inhibition effect to the growth of fungal pathogens and Saccharomyces cerevisiae.2012 · DOI: 10.1016/j.gene.2012.06.070
`At4g12500`	Probable lipid transfer protein (LTP).	No verified direct reference in this release
`At4g12490`	Probable lipid transfer protein (LTP).	Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana.2011 · DOI: 10.1111/j.1438-8677.2010.00428.x
`At4g12470`	Probable lipid transfer protein (LTP).	Priming in systemic plant immunity.2009 · DOI: 10.1126/science.1170025 Cold-inducible expression of AZI1 and its function in improvement of freezing tolerance of Arabidopsis thaliana and Saccharomyces cerevisiae.2011 · DOI: 10.1016/j.jplph.2011.01.023 Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana.2011 · DOI: 10.1111/j.1438-8677.2010.00428.x Metabolomic analysis reveals the relationship between AZI1 and sugar signaling in systemic acquired resistance of Arabidopsis.2016 · DOI: 10.1016/j.plaphy.2016.06.016

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026588 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009631 cold acclimation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009682 induced systemic resistance Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0070417 cellular response to cold Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT4G12470

ath:AT4G12480

ath:AT4G12490

ath:AT4G12500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.538

Rank 1 · LXL04_026588 · OH-1004

Lysosome / Vacuole0.177

Rank 2 · LXL04_026588 · OH-1004

Cytoplasm0.146

Rank 3 · LXL04_026588 · OH-1004

Endoplasmic reticulum0.145

Rank 4 · LXL04_026588 · OH-1004

Cell membrane0.080

Rank 5 · LXL04_026588 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368.12LTP_228-123 aa

PF14547.12Hydrophob_seed40-124 aa

PF00234.28Tryp_alpha_amyl41-123 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026588	`PF14368.12`	LTP_2	28	123	1.2e-06	29.2
LXL04_026588	`PF14547.12`	Hydrophob_seed	40	124	7.2e-26	91.1
LXL04_026588	`PF00234.28`	Tryp_alpha_amyl	41	123	3.6e-17	63.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39176`	Arabidopsis thaliana	Lipid transfer protein EARLI 1	44.643%	Swiss-Prot	moderate database homology
`Q9SU33`	Arabidopsis thaliana	pEARLI1-like lipid transfer protein 3	43.503%	Swiss-Prot	moderate database homology
`Q9SU34`	Arabidopsis thaliana	pEARLI1-like lipid transfer protein 2	43.407%	Swiss-Prot	moderate database homology
`Q9SU35`	Arabidopsis thaliana	pEARLI1-like lipid transfer protein 1	47.826%	Swiss-Prot	moderate database homology

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