LXL04_026514 | RubberDandelionOmics

Gene overview

LXL04_026514

Reference: OH-1004 Chr: Chr05 Coordinates: 127566408-127566887 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · LXL04_026514|LXL04_026514|OH1004|cDNA

ATGAACGACGCTACAAGTTTCCAGCCATCGGAGCCTGCACTCTGCGCCAACGGCTGCGGCTTCTTCGGCACGGCGACGACGATGAACTTCTGCTCCAAGTGCTTCCGTGACCTTCGAATCAAAGACGAGCAAGCAGCTTCCGCCAAAGCCGCCGTGGACAAACTGGTAAACAAGGTCGTCACCTTGGCTCCTCATTCAGCGGCGTATCCTTCCTCTTCGTCGTCTTCGGTATCTGTACCTGAAACCCTATCGCAACCTTC...

CDS

Download CDS FASTA

480 bp · LXL04_026514|LXL04_026514|OH1004|CDS

ATGAACGACGCTACAAGTTTCCAGCCATCGGAGCCTGCACTCTGCGCCAACGGCTGCGGCTTCTTCGGCACGGCGACGACGATGAACTTCTGCTCCAAGTGCTTCCGTGACCTTCGAATCAAAGACGAGCAAGCAGCTTCCGCCAAAGCCGCCGTGGACAAACTGGTAAACAAGGTCGTCACCTTGGCTCCTCATTCAGCGGCGTATCCTTCCTCTTCGTCGTCTTCGGTATCTGTACCTGAAACCCTATCGCAACCTTC...

Protein

Download Protein FASTA

159 aa · LXL04_026514|LXL04_026514|OH1004|PROTEIN

MNDATSFQPSEPALCANGCGFFGTATTMNFCSKCFRDLRIKDEQAASAKAAVDKLVNKVVTLAPHSAAYPSSSSSSVSVPETLSQPSTAEEVNVKGSNRCLTCRKKIGVMGFKCRCGESFCGSHRYPEKHDCEFDFKRSGRDAIAKANPVVKADKVDRI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026514`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026514

Location Chr05:127566408-127566887 (+)

Description Similar to SAP7: Zinc finger A20 and AN1 domain-containing stress-associated protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12040`	May be involved in environmental stress response.	No verified direct reference in this release
`At1g12440`	May be involved in environmental stress response.	No verified direct reference in this release
`At4g22820`	May be involved in environmental stress response.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0195600`	May be involved in environmental stress response.	No verified direct reference in this release
`Os06g0612800`	May be involved in environmental stress response.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026514 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT1G12440

ath:AT4G12040

ath:AT4G22820

dosa:Os02g0195600

dosa:Os06g0612800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.617

Rank 1 · LXL04_026514 · OH-1004

Cytoplasm0.470

Rank 2 · LXL04_026514 · OH-1004

Mitochondrion0.042

Rank 3 · LXL04_026514 · OH-1004

Cell membrane0.023

Rank 4 · LXL04_026514 · OH-1004

Golgi apparatus0.017

Rank 5 · LXL04_026514 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01754.24zf-A2014-39 aa

PF01428.24zf-AN1102-136 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026514	`PF01754.24`	zf-A20	14	39	1.7e-14	53.8
LXL04_026514	`PF01428.24`	zf-AN1	102	136	1.5e-10	41.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ69`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	53.529%	Swiss-Prot	strong database homology
`Q6NNI8`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	52.601%	Swiss-Prot	strong database homology
`O49663`	Arabidopsis thaliana	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	48.256%	Swiss-Prot	moderate database homology
`Q6H7P8`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 4	47.337%	Swiss-Prot	moderate database homology
`A3BDI8`	Oryza sativa subsp. japonica	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	48.765%	Swiss-Prot	moderate database homology

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