LXL04_026270 | RubberDandelionOmics

Gene overview

LXL04_026270

Reference: OH-1004 Chr: Chr05 Coordinates: 124135864-124138472 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2140 bp · LXL04_026270|LXL04_026270|OH1004|cDNA

ATGGAGACTCAATCAGAAAGCACGGACGAAATTGCGAACATCAAAGAAATTCGGCAACAAATCCAGTCTCGTATTGAAACGCTACGAAATTCTCAGCTCGAAGTTATATCGTCTCTCCAGTATGGTGTAGTTCCAGACATTACATCGTCTCTCGATCTCCATCTCCAAGTCGTTTCCTCCTTCAATGGCCGCCCATTCACCCCTTTACCTAACCCTCTTCCCGCCCCCAACCCTAATACTAGACGACGCATTCAACCACC...

CDS

Download CDS FASTA

2127 bp · LXL04_026270|LXL04_026270|OH1004|CDS

ATGGAGACTCAATCAGAAAGCACGGACGAAATTGCGAACATCAAAGAAATTCGGCAACAAATCCAGTCTCGTATTGAAACGCTACGAAATTCTCAGCTCGAAGTTATATCGTCTCTCCAGTATGGTGTAGTTCCAGACATTACATCGTCTCTCGATCTCCATCTCCAAGTCGTTTCCTCCTTCAATGGCCGCCCATTCACCCCTTTACCTAACCCTCTTCCCGCCCCCAACCCTAATACTAGACGACGCATTCAACCACC...

Protein

Download Protein FASTA

708 aa · LXL04_026270|LXL04_026270|OH1004|PROTEIN

METQSESTDEIANIKEIRQQIQSRIETLRNSQLEVISSLQYGVVPDITSSLDLHLQVVSSFNGRPFTPLPNPLPAPNPNTRRRIQPPPPAPTIKISKLSDDLHTRPSADDFTGDEVGGGTTPLSTVRSMVAVCLLERVPFTEIDSASILSKLESDSFQSVTTAEKATLREVAGGEPILAVEMALRAMAEDNGGVQFEEFKMNGKFRVLVKGIDRTKLVKELPESKPNESNSNNSSGGNAIQQSSRAIGDGGWMGQGDASQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026270`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026270

Location Chr05:124135864-124138472 (-)

Description Similar to MTA: N6-adenosine-methyltransferase MT-A70-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10760`	Catalytic subunit of the N6-methyltransferase complex, a multiprotein complex that mediates N6-methyladenosine (m6A) methylation at the 5'-[AG]GAC-3' consensus sites of some mRNAs.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0672600`	Probable N6-methyltransferase that methylates adenosine residues of some mRNAs.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026270 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0001510 RNA methylation Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006402 mRNA catabolic process Biological Process

GO:0006406 mRNA export from nucleus Biological Process

GO:0006974 DNA damage response Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016556 mRNA modification Biological Process

GO:0019827 stem cell population maintenance Biological Process

GO:0031053 primary miRNA processing Biological Process

KEGG gene cross-reference

ath:AT4G10760

dosa:Os02g0672600

hsa:56339

mmu:56335

mtr:11429893

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.884

Rank 1 · LXL04_026270 · OH-1004

Cytoplasm0.216

Rank 2 · LXL04_026270 · OH-1004

Mitochondrion0.031

Rank 3 · LXL04_026270 · OH-1004

Cell membrane0.020

Rank 4 · LXL04_026270 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_026270 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05063.21MT-A70486-646 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026270	`PF05063.21`	MT-A70	486	646	2.6e-61	207.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82486`	Arabidopsis thaliana	N(6)-adenosine-methyltransferase MT-A70-like	62.020%	Swiss-Prot	strong database homology
`Q6EU10`	Oryza sativa subsp. japonica	Probable N(6)-adenosine-methyltransferase MT-A70-like	59.654%	Swiss-Prot	strong database homology

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