LXL04_026265 | RubberDandelionOmics

Gene overview

LXL04_026265

Reference: OH-1004 Chr: Chr05 Coordinates: 124084159-124086450 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

279 bp · LXL04_026265|LXL04_026265|OH1004|cDNA

ATGTCATCATGTATTTTATTAACTATACAAACTATAGTAGTATTTTACCCCAACGCCTTTCCAAACATTATAAAGACGGGTTTTTTTGCTATTAACCTTATATACTTCTTCACTGTTGGACCTGATGATGTACTGTTTTTTGTCCTTAAAATGCAAGGGCAGTTCATACAGATTTTGAAAGAGGCGTTCGAAAGTAAGGGAACCGTCATTTGTAAGGAGGAAGACGTACCTGTAAAAGGAAGTAGCAGTAACAAAGGAAG...

CDS

Download CDS FASTA

279 bp · LXL04_026265|LXL04_026265|OH1004|CDS

ATGTCATCATGTATTTTATTAACTATACAAACTATAGTAGTATTTTACCCCAACGCCTTTCCAAACATTATAAAGACGGGTTTTTTTGCTATTAACCTTATATACTTCTTCACTGTTGGACCTGATGATGTACTGTTTTTTGTCCTTAAAATGCAAGGGCAGTTCATACAGATTTTGAAAGAGGCGTTCGAAAGTAAGGGAACCGTCATTTGTAAGGAGGAAGACGTACCTGTAAAAGGAAGTAGCAGTAACAAAGGAAG...

Protein

Download Protein FASTA

92 aa · LXL04_026265|LXL04_026265|OH1004|PROTEIN

MSSCILLTIQTIVVFYPNAFPNIIKTGFFAINLIYFFTVGPDDVLFFVLKMQGQFIQILKEAFESKGTVICKEEDVPVKGSSSNKGSMGDRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026265`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026265

Location Chr05:124084159-124086450 (+)

Description Similar to YchF1: Obg-like ATPase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30580`	Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency.	The unconventional P-loop NTPase OsYchF1 and its regulator OsGAP1 play opposite roles in salinity stress tolerance.2013 · DOI: 10.1111/pce.12108

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0199300`	Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency.	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.2010 · DOI: 10.1074/jbc.m110.172080 ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.2016 · DOI: 10.1073/pnas.1522966113
`UniProt: B8BBN7`	Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026265 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009651 response to salt stress Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:1901001 negative regulation of response to salt stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003924 GTPase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0005525 GTP binding Molecular Function

KEGG gene cross-reference

ath:AT1G30580

dosa:Os08g0199300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.340

Rank 1 · LXL04_026265 · OH-1004

Cytoplasm0.188

Rank 2 · LXL04_026265 · OH-1004

Golgi apparatus0.166

Rank 3 · LXL04_026265 · OH-1004

Nucleus0.142

Rank 4 · LXL04_026265 · OH-1004

Mitochondrion0.135

Rank 5 · LXL04_026265 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SA73`	Arabidopsis thaliana	Obg-like ATPase 1	57.500%	Swiss-Prot	weak database homology
`Q6Z1J6`	Oryza sativa subsp. japonica	Obg-like ATPase 1	36.782%	Swiss-Prot	moderate database homology
`B8BBN7`	Oryza sativa subsp. indica	Obg-like ATPase 1	36.782%	Swiss-Prot	moderate database homology

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