LXL04_026023 | RubberDandelionOmics

Gene overview

LXL04_026023

Reference: OH-1004 Chr: Chr05 Coordinates: 119887340-119889928 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1818 bp · LXL04_026023|LXL04_026023|OH1004|cDNA

ATGATAATGATTCAATTCAGAATTGGGCACAGGCACACGCATGGCGCAACTATAAATCCATCAGTTCAGCAACACTTCGCAATCTGTAAAATCCGATCCTCTAGCGGTTTTAGGTTTTCATCTGCCGGGAATAAGAGAATCTTGTGCAATTTCAAGTTGGCTTTACTTTTCCAACTAATTTTTGCATTCTATTTCATTACAGCTTTTGGGCCAAAAAGAATGCATGACGGTAGAATGGATTTTGGGCATGGAAAATTTAG...

CDS

Download CDS FASTA

1818 bp · LXL04_026023|LXL04_026023|OH1004|CDS

ATGATAATGATTCAATTCAGAATTGGGCACAGGCACACGCATGGCGCAACTATAAATCCATCAGTTCAGCAACACTTCGCAATCTGTAAAATCCGATCCTCTAGCGGTTTTAGGTTTTCATCTGCCGGGAATAAGAGAATCTTGTGCAATTTCAAGTTGGCTTTACTTTTCCAACTAATTTTTGCATTCTATTTCATTACAGCTTTTGGGCCAAAAAGAATGCATGACGGTAGAATGGATTTTGGGCATGGAAAATTTAG...

Protein

Download Protein FASTA

605 aa · LXL04_026023|LXL04_026023|OH1004|PROTEIN

MIMIQFRIGHRHTHGATINPSVQQHFAICKIRSSSGFRFSSAGNKRILCNFKLALLFQLIFAFYFITAFGPKRMHDGRMDFGHGKFRMTLEEDRLSSLPDELIYKILSHLSLQEAIETSVLSTSWRSIWKSMPYLNFVSLVKIDSPHDFFTLVYNVLSHRNNQAQLSSVDLYCDGKVSHEFVKRFLEYMVTHNIQQLNLTWLLEDEAEFPLSLYSCRSLQHLNLHNIAFRASYSATPTWDLPNLTTLHLSNITVSNNCSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026023`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026023

Location Chr05:119887340-119889928 (-)

Description Similar to At2g05300: Putative F-box/FBD/LRR-repeat protein At2g05300

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05300`	Putative F-box/FBD/LRR-repeat protein At2g05300.	No verified direct reference in this release
`At5g56560`	Putative FBD-associated F-box protein At5g56560.	No verified direct reference in this release
`At5g53840`	F-box/FBD/LRR-repeat protein At5g53840.	No verified direct reference in this release
`At5g22720`	Putative FBD-associated F-box protein At5g22720.	No verified direct reference in this release
`At4g03220`	Putative F-box/FBD/LRR-repeat protein At4g03220.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026023 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT4G03220

ath:AT5G22720

ath:AT5G53840

ath:AT5G56560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.873

Rank 1 · LXL04_026023 · OH-1004

Cytoplasm0.144

Rank 2 · LXL04_026023 · OH-1004

Cell membrane0.049

Rank 3 · LXL04_026023 · OH-1004

Endoplasmic reticulum0.035

Rank 4 · LXL04_026023 · OH-1004

Plastid0.016

Rank 5 · LXL04_026023 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box95-133 aa

PF23622.2LRR_At1g61320_AtMIF1165-387 aa

PF24758.2LRR_At5g56370183-320 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026023	`PF00646.39`	F-box	95	133	3.1e-09	37.1
LXL04_026023	`PF23622.2`	LRR_At1g61320_AtMIF1	165	387	6.9e-10	39.6
LXL04_026023	`PF24758.2`	LRR_At5g56370	183	320	5e-10	40.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJ32`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At2g05300	32.836%	Swiss-Prot	weak database homology
`Q9FJV2`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g56560	28.421%	Swiss-Prot	weak database homology
`Q9FGQ3`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g53840	27.885%	Swiss-Prot	weak database homology
`Q9FNI9`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g22720	29.066%	Swiss-Prot	weak database homology
`Q9ZR09`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At4g03220	25.147%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card