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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_025661
Reference: OH-1004 Chr: Chr05 Coordinates: 114864689-114866071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1383 bp · LXL04_025661|LXL04_025661|OH1004|cDNA

ATGAGGAAAGACCACTACAGCTTGTTTATATTACTACAGAAGCATCACTGCAACCACCGATCAGTCCAACAAATCCACGCTCACTTGGTCAGCACCGCCTCTTCAATCCAAACACCACCACCCATCAGCCTCTGGACCGCCATCCTCCGCCATTACTCACTCGGGAATTCCCCAATCGACGCCTTTTTGCTCTATAAAAACCATCTCCACCCCACACCCTCGTTTCAAGCCGATAGTTTCACATACGCTTTCCTAATCAA...

CDS

Download CDS FASTA

1383 bp · LXL04_025661|LXL04_025661|OH1004|CDS

ATGAGGAAAGACCACTACAGCTTGTTTATATTACTACAGAAGCATCACTGCAACCACCGATCAGTCCAACAAATCCACGCTCACTTGGTCAGCACCGCCTCTTCAATCCAAACACCACCACCCATCAGCCTCTGGACCGCCATCCTCCGCCATTACTCACTCGGGAATTCCCCAATCGACGCCTTTTTGCTCTATAAAAACCATCTCCACCCCACACCCTCGTTTCAAGCCGATAGTTTCACATACGCTTTCCTAATCAA...

Protein

Download Protein FASTA

460 aa · LXL04_025661|LXL04_025661|OH1004|PROTEIN

MRKDHYSLFILLQKHHCNHRSVQQIHAHLVSTASSIQTPPPISLWTAILRHYSLGNSPIDAFLLYKNHLHPTPSFQADSFTYAFLIKSCANSHLPKSGSQLHSITFKSAFQTHVYVQTALVNMYVTCGYSLECRQVFDEMPERNLVTWNVLITGLSKLGEIPLARSFFDKMPLKNVVTFSGMIDGYTRANQPKEAISLFKHMLTLTNTTKPTEITILALYPAIWNLGSLELCQSVHAYGEKNGFYTIDIRVTNALIDVYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_025661
TK1151 IDTkA06G047140
OH-1004 IDLXL04_025661
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_025661
LocationChr05:114864689-114866071 (+)
DescriptionSimilar to PCMP-E25: Pentatricopeptide repeat-containing protein At1g09220, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09220 Pentatricopeptide repeat-containing protein At1g09220, mitochondrial. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At4g37380 Plays a major role in single RNA editing events in chloroplasts. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At1g74630 Pentatricopeptide repeat-containing protein At1g74630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025661 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G09220
ath:AT5G48910
ath:AT5G56310
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.658
Rank 1 · LXL04_025661 · OH-1004
Plastid0.148
Rank 2 · LXL04_025661 · OH-1004
Nucleus0.055
Rank 3 · LXL04_025661 · OH-1004
Cytoplasm0.033
Rank 4 · LXL04_025661 · OH-1004
Cell membrane0.004
Rank 5 · LXL04_025661 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2144-176 aa
PF01535.27PPR146-175 aa
PF13041.13PPR_2174-204 aa
PF12854.14PPR_1175-202 aa
PF01535.27PPR177-203 aa
PF13812.13PPR_3279-327 aa
PF13041.13PPR_2281-328 aa
PF01535.27PPR283-312 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_025661PF13041.13PPR_21441764.3e-38129.9
LXL04_025661PF01535.27PPR1461756.6e-45149.0
LXL04_025661PF13041.13PPR_21742044.3e-38129.9
LXL04_025661PF12854.14PPR_11752021.5e-32111.7
LXL04_025661PF01535.27PPR1772036.6e-45149.0
LXL04_025661PF13812.13PPR_32793273.1e-1453.5
LXL04_025661PF13041.13PPR_22813284.3e-38129.9
LXL04_025661PF01535.27PPR2833126.6e-45149.0
LXL04_025661PF12854.14PPR_13483751.5e-32111.7
LXL04_025661PF20431.5E_motif3994605.8e-1452.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q680Z7Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g09220, mitochondrial49.785%Swiss-Protmoderate database homology
Q9FI80Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g4891036.490%Swiss-Protmoderate database homology
Q9SZT8Arabidopsis thalianaPentatricopeptide repeat-containing protein ELI1, chloroplastic36.730%Swiss-Protmoderate database homology
Q9FMA1Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g5631037.984%Swiss-Protmoderate database homology
Q9CA54Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g7463034.404%Swiss-Protmoderate database homology

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