LXL04_025449 | RubberDandelionOmics

Gene overview

LXL04_025449

Reference: OH-1004 Chr: Chr05 Coordinates: 111948219-111953733 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2175 bp · LXL04_025449|LXL04_025449|OH1004|cDNA

ATGCGCTTCAAAGAAACCATTCTGTTCCTTATATGTTTCTCTCTATCCATAACCATCTCATCTGGAGCCAACACCATATCTGCAAACCAGTCTTTGTCTGGAGACCAAACCATCATATCCGAAGGTGAACAATTCGAGCTGGGTTTTTTCAAAGCAGGTAACACTTCCAATTATTACATAGGCATTTGGTATAATAAGCTCAATTCCAATCCTCCTACCATTGTTTGGGTGGCAAACAGAGAAACACCCATCTCCGATAG...

CDS

Download CDS FASTA

2175 bp · LXL04_025449|LXL04_025449|OH1004|CDS

ATGCGCTTCAAAGAAACCATTCTGTTCCTTATATGTTTCTCTCTATCCATAACCATCTCATCTGGAGCCAACACCATATCTGCAAACCAGTCTTTGTCTGGAGACCAAACCATCATATCCGAAGGTGAACAATTCGAGCTGGGTTTTTTCAAAGCAGGTAACACTTCCAATTATTACATAGGCATTTGGTATAATAAGCTCAATTCCAATCCTCCTACCATTGTTTGGGTGGCAAACAGAGAAACACCCATCTCCGATAG...

Protein

Download Protein FASTA

724 aa · LXL04_025449|LXL04_025449|OH1004|PROTEIN

MRFKETILFLICFSLSITISSGANTISANQSLSGDQTIISEGEQFELGFFKAGNTSNYYIGIWYNKLNSNPPTIVWVANRETPISDRFRSELKIINGNLVLLNESKSQIWSTNVIATTTTLKSAEALILDNGNLVLRDGSNSVEPVWQSFDNPTHTWLPGMFSVELRPSSKEYVIKWNGSQQYWTTGNWNGKSFDLIPQLSLTHNYDFRQFGLTSCHCLTGFKPRSENDWNQSDFSVKNMPPNNSVAIGNAGECRTTCLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025449`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025449

Location Chr05:111948219-111953733 (+)

Description Similar to SD22: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00340`	Serine/threonine-protein kinase.	No verified direct reference in this release
`At2g19130`	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130.	No verified direct reference in this release
`At1g11303`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11303.	No verified direct reference in this release
`At1g61390`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390.	No verified direct reference in this release
`At1g61460`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025449 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G19130

ath:AT4G00340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.767

Rank 1 · LXL04_025449 · OH-1004

Endoplasmic reticulum0.116

Rank 2 · LXL04_025449 · OH-1004

Cytoplasm0.081

Rank 3 · LXL04_025449 · OH-1004

Nucleus0.059

Rank 4 · LXL04_025449 · OH-1004

Extracellular0.045

Rank 5 · LXL04_025449 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin73-163 aa

PF08276.18PAN_2247-283 aa

PF07714.24PK_Tyr_Ser-Thr367-443 aa

PF00069.32Pkinase368-447 aa

PF04844.19Ovate585-635 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025449	`PF01453.31`	B_lectin	73	163	2.2e-26	93.1
LXL04_025449	`PF08276.18`	PAN_2	247	283	2.3e-09	37.9
LXL04_025449	`PF07714.24`	PK_Tyr_Ser-Thr	367	443	4.2e-10	40.1
LXL04_025449	`PF00069.32`	Pkinase	368	447	7.9e-09	36.0
LXL04_025449	`PF04844.19`	Ovate	585	635	8.6e-22	77.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39203`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	32.197%	Swiss-Prot	moderate database homology
`O64477`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	42.149%	Swiss-Prot	weak database homology
`Q9SXB5`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11303	26.058%	Swiss-Prot	weak database homology
`O64781`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390	25.383%	Swiss-Prot	weak database homology
`O64774`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460	27.154%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card