LXL04_025389 | RubberDandelionOmics

Gene overview

LXL04_025389

Reference: OH-1004 Chr: Chr05 Coordinates: 110951794-110952695 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · LXL04_025389|LXL04_025389|OH1004|cDNA

ATGTGCGATCTTCTGAGAATCAACACCGACAGAGGAGTCATGATTCATGATCAAACATCTCGATTTTCCATTAACGGCAAACCCATTTTCCATTTCGTCGGAACTTCAACTTTCAGTCATTACACCGTCGTTCATGTCGGAACTTCAACTTTCTCTGATCAGGCTACTGAAGGTGCAAGAATGGCAGGGGCTTCGAGGTGTAGGAAAGCTGGATCGGTTCCGGTTTACCTGAATGTCTATGATCTTACCTCCATGAATGG...

CDS

Download CDS FASTA

828 bp · LXL04_025389|LXL04_025389|OH1004|CDS

ATGTGCGATCTTCTGAGAATCAACACCGACAGAGGAGTCATGATTCATGATCAAACATCTCGATTTTCCATTAACGGCAAACCCATTTTCCATTTCGTCGGAACTTCAACTTTCAGTCATTACACCGTCGTTCATGTCGGAACTTCAACTTTCTCTGATCAGGCTACTGAAGGTGCAAGAATGGCAGGGGCTTCGAGGTGTAGGAAAGCTGGATCGGTTCCGGTTTACCTGAATGTCTATGATCTTACCTCCATGAATGG...

Protein

Download Protein FASTA

275 aa · LXL04_025389|LXL04_025389|OH1004|PROTEIN

MCDLLRINTDRGVMIHDQTSRFSINGKPIFHFVGTSTFSHYTVVHVGTSTFSDQATEGARMAGASRCRKAGSVPVYLNVYDLTSMNGCAYWLGLSATTGIFEGEPKQCAGFTFRKQILMGWTEMSLREIRRFMRELAQEYRGTSPNLITKNCNHFCNDACLGFTGNPIPSWINRLARIGFLCDCIIPANVRSCKVGIEENQAYNGDQMKKKLSNRPGRFSLSSRSSEKSTLASTLVEYLTRSLVTRSILPSSELFFYRFP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025389`
TK1151 ID	TkA06G062110
OH-1004 ID	LXL04_025389
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 76.515 / OH-1004 36.727 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025389

Location Chr05:110951794-110952695 (-)

Description Similar to At4g17486: DeSI-like protein At4g17486

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17486`	DeSI-like protein At4g17486.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0210300`	Alcohol dehydrogenase 1.	No verified direct reference in this release
`UniProt: Q75ZX4`	Alcohol dehydrogenase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025389 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0046294 formaldehyde catabolic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function

GO:0101005 deubiquitinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G17486

dosa:Os11g0210300

zma:542363

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.401

Rank 1 · LXL04_025389 · OH-1004

Nucleus0.311

Rank 2 · LXL04_025389 · OH-1004

Mitochondrion0.170

Rank 3 · LXL04_025389 · OH-1004

Cell membrane0.155

Rank 4 · LXL04_025389 · OH-1004

Endoplasmic reticulum0.146

Rank 5 · LXL04_025389 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05903.21Peptidase_C9790-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025389	`PF05903.21`	Peptidase_C97	90	188	1.2e-30	107.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93VG8`	Arabidopsis thaliana	DeSI-like protein At4g17486	42.177%	Swiss-Prot	weak database homology
`Q2R8Z5`	Oryza sativa subsp. japonica	Alcohol dehydrogenase 1	87.234%	Swiss-Prot	weak database homology
`Q75ZX4`	Oryza sativa subsp. indica	Alcohol dehydrogenase 1	87.234%	Swiss-Prot	weak database homology

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