LXL04_025336 | RubberDandelionOmics

Gene overview

LXL04_025336

Reference: OH-1004 Chr: Chr05 Coordinates: 110012016-110013161 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_025336|LXL04_025336|OH1004|cDNA

ATGTCAACAATCGTTGTGATTGCATGTGTGCTTGTGCTCTTCGCCGCCACCTCGCCAGCGGTTAGGGGTAAATATTACTCCGACAGCCAGATAGTTGATGACCCAATCACCATAAAGAAAACCCATCTCCACTTTTTCATACACGACATCCTTTCCGGCGACAACCCTTCCTCCGTCATCGTAGCAAAACCGAACGGCACGGTGGTTCAAGAAGGCAACGTCCTCCCGTTTGGAGCCGTTTACGTATTCGATGACTGGCT...

CDS

Download CDS FASTA

654 bp · LXL04_025336|LXL04_025336|OH1004|CDS

ATGTCAACAATCGTTGTGATTGCATGTGTGCTTGTGCTCTTCGCCGCCACCTCGCCAGCGGTTAGGGGTAAATATTACTCCGACAGCCAGATAGTTGATGACCCAATCACCATAAAGAAAACCCATCTCCACTTTTTCATACACGACATCCTTTCCGGCGACAACCCTTCCTCCGTCATCGTAGCAAAACCGAACGGCACGGTGGTTCAAGAAGGCAACGTCCTCCCGTTTGGAGCCGTTTACGTATTCGATGACTGGCT...

Protein

Download Protein FASTA

217 aa · LXL04_025336|LXL04_025336|OH1004|PROTEIN

MSTIVVIACVLVLFAATSPAVRGKYYSDSQIVDDPITIKKTHLHFFIHDILSGDNPSSVIVAKPNGTVVQEGNVLPFGAVYVFDDWLTVGPDPNSKIIGNARGMYTSTSRGSDLTLLFSGDFEFTSGGFNGSSISVFSRDPLVLAKEVAVVGGRGKFRMAKGSSPAVSLLLRRSFSPPPSSRPPASCPSAAAPITDLKADPTESTRASDYGQSPTGE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025336`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025336

Location Chr05:110012016-110013161 (-)

Description Similar to DIR4: Dirigent protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21110`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At4g38700`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At5g42510`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025336 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0140859 pterocarpan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT2G21110

ath:AT4G38700

ath:AT5G42510

gmx:100500621

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.456

Rank 1 · LXL04_025336 · OH-1004

Endoplasmic reticulum0.211

Rank 2 · LXL04_025336 · OH-1004

Cytoplasm0.114

Rank 3 · LXL04_025336 · OH-1004

Lysosome / Vacuole0.099

Rank 4 · LXL04_025336 · OH-1004

Cell membrane0.078

Rank 5 · LXL04_025336 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018.20Dirigent41-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025336	`PF03018.20`	Dirigent	41	163	4.9e-39	134.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKQ2`	Arabidopsis thaliana	Dirigent protein 4	52.414%	Swiss-Prot	moderate database homology
`F4JUF8`	Arabidopsis thaliana	Dirigent protein 15	50.769%	Swiss-Prot	moderate database homology
`Q9FIG6`	Arabidopsis thaliana	Dirigent protein 1	43.307%	Swiss-Prot	moderate database homology

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