LXL04_025309 | RubberDandelionOmics

Gene overview

LXL04_025309

Reference: OH-1004 Chr: Chr05 Coordinates: 109515115-109517108 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1089 bp · LXL04_025309|LXL04_025309|OH1004|cDNA

ATGTCGATAGTTACTAGATCCAGACGAATATTCTCAATTGTATTGAAGAGCAACAAGAACCCTCGATTGTATTCAAGTGTCACTGCAAATCCACCCAAAGAACCCATCATCTCATCTTCTATCCTGGGTGATCAGTCTGCATCttcacctccaccacctccaccaccggAAACTGCAGCCGCCACCAAAGGAGGTGGACCACTATCGAGTTTTCTCAAGTATTCTTTAGCTGCAGCAGTTACTGGAGGTCTTGCCACTGC...

CDS

Download CDS FASTA

1089 bp · LXL04_025309|LXL04_025309|OH1004|CDS

ATGTCGATAGTTACTAGATCCAGACGAATATTCTCAATTGTATTGAAGAGCAACAAGAACCCTCGATTGTATTCAAGTGTCACTGCAAATCCACCCAAAGAACCCATCATCTCATCTTCTATCCTGGGTGATCAGTCTGCATCTTCACCTCCACCACCTCCACCACCGGAAACTGCAGCCGCCACCAAAGGAGGTGGACCACTATCGAGTTTTCTCAAGTATTCTTTAGCTGCAGCAGTTACTGGAGGTCTTGCCACTGC...

Protein

Download Protein FASTA

362 aa · LXL04_025309|LXL04_025309|OH1004|PROTEIN

MSIVTRSRRIFSIVLKSNKNPRLYSSVTANPPKEPIISSSILGDQSASSPPPPPPPETAAATKGGGPLSSFLKYSLAAAVTGGLATAGYATYAYSLEEIDEKTRGLRASANVSVGDDLSSFEKFQAMLKSTAMTVPAKLVELYLDLRASTEEHVRGFTEPLSEKLLPDLHPQEQHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDDFLEHLAQFYEIIVYSDQQPMYVDPIVDRLDGKHCIRYRLSRAATRYQDGKHY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025309`
TK1151 ID	TkA06G068590
OH-1004 ID	LXL04_025309
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025309

Location Chr05:109515115-109517108 (-)

Description Similar to TIM50: Mitochondrial import inner membrane translocase subunit TIM50

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55900`	Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025309 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0015031 protein transport Biological Process

GO:0030150 protein import into mitochondrial matrix Biological Process

GO:0045039 protein insertion into mitochondrial inner membrane Biological Process

GO:0046902 regulation of mitochondrial membrane permeability Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005744 TIM23 mitochondrial import inner membrane translocase complex Cellular Component

GO:0030943 mitochondrion targeting sequence binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

afm:AFUA_2G03420

ani:ANIA_04490

ath:AT1G55900

fgr:FGSG_09359

sce:YPL063W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.946

Rank 1 · LXL04_025309 · OH-1004

Nucleus0.073

Rank 2 · LXL04_025309 · OH-1004

Cytoplasm0.066

Rank 3 · LXL04_025309 · OH-1004

Cell membrane0.041

Rank 4 · LXL04_025309 · OH-1004

Endoplasmic reticulum0.024

Rank 5 · LXL04_025309 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03031.25NIF178-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025309	`PF03031.25`	NIF	178	318	1.1e-38	133.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYE2`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM50	65.085%	Swiss-Prot	strong database homology

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