LXL04_025230 | RubberDandelionOmics

Gene overview

LXL04_025230

Reference: OH-1004 Chr: Chr05 Coordinates: 108238317-108239904 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · LXL04_025230|LXL04_025230|OH1004|cDNA

ATGCCGTCGCACGCAGATGTAGATCGGCAGATAGAGCAATTGATGGAGTGCAAACCGTTGACGGAATCGGAGGTGAAAATTCTTTGCGATCAAGCTAGGGCCATACTTGTAGAGGAATGGAATGTCCAGCCGGTCAAATGTCCTGTTACCGTTTGTGGTGATATTCATGGTCAGTTTTACGATCTAATCGAGCTGTTTCGGATAGGCGGAAATCCTCCCGATACCAATTATCTCTTCATGGGCGATTACGTTGATCGTGG...

CDS

Download CDS FASTA

921 bp · LXL04_025230|LXL04_025230|OH1004|CDS

ATGCCGTCGCACGCAGATGTAGATCGGCAGATAGAGCAATTGATGGAGTGCAAACCGTTGACGGAATCGGAGGTGAAAATTCTTTGCGATCAAGCTAGGGCCATACTTGTAGAGGAATGGAATGTCCAGCCGGTCAAATGTCCTGTTACCGTTTGTGGTGATATTCATGGTCAGTTTTACGATCTAATCGAGCTGTTTCGGATAGGCGGAAATCCTCCCGATACCAATTATCTCTTCATGGGCGATTACGTTGATCGTGG...

Protein

Download Protein FASTA

306 aa · LXL04_025230|LXL04_025230|OH1004|PROTEIN

MPSHADVDRQIEQLMECKPLTESEVKILCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNPPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGFNWCQEKNVVTVFSAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025230`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025230

Location Chr05:108238317-108239904 (+)

Description Similar to PP2A2: Serine/threonine-protein phosphatase PP2A-2 catalytic subunit

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10430`	Dephosphorylates and activates the actin-depolymerizing factor ADF1, which, in turn, regulates actin cytoskeleton remodeling and is involved in the blue light photoreceptor PHOT2-mediated chloroplast avoidance movements.	No verified direct reference in this release
`At1g59830`	Serine/threonine-protein phosphatase PP2A-1 catalytic subunit.	No verified direct reference in this release
`At1g69960`	Associates with the serine/threonine-protein phosphatase PP2A regulatory subunits A and B' to positively regulates beta-oxidation of fatty acids and protoauxins in peroxisomes by dephosphorylating peroxisomal beta-oxidation-related proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0574500`	Serine/threonine-protein phosphatase PP2A-1 catalytic subunit.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025230 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009903 chloroplast avoidance movement Biological Process

GO:0032000 positive regulation of fatty acid beta-oxidation Biological Process

GO:2000012 regulation of auxin polar transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G10430

ath:AT1G59830

ath:AT1G69960

dosa:Os06g0574500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.749

Rank 1 · LXL04_025230 · OH-1004

Nucleus0.537

Rank 2 · LXL04_025230 · OH-1004

Mitochondrion0.057

Rank 3 · LXL04_025230 · OH-1004

Cell membrane0.050

Rank 4 · LXL04_025230 · OH-1004

Peroxisome0.040

Rank 5 · LXL04_025230 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00149.34Metallophos48-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025230	`PF00149.34`	Metallophos	48	241	4.4e-46	158.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q07098`	Arabidopsis thaliana	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	94.118%	Swiss-Prot	strong database homology
`Q07099`	Arabidopsis thaliana	Serine/threonine-protein phosphatase PP2A-1 catalytic subunit	93.791%	Swiss-Prot	strong database homology
`O04951`	Arabidopsis thaliana	Serine/threonine-protein phosphatase PP2A-5 catalytic subunit	93.443%	Swiss-Prot	strong database homology
`Q0DBD3`	Oryza sativa subsp. japonica	Serine/threonine-protein phosphatase PP2A-1 catalytic subunit	93.137%	Swiss-Prot	strong database homology

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