LXL04_025193 | RubberDandelionOmics

Gene overview

LXL04_025193

Reference: OH-1004 Chr: Chr05 Coordinates: 107353243-107355460 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

954 bp · LXL04_025193|LXL04_025193|OH1004|cDNA

ATGACTTGCGCTGGAATGGCCTTCTTCTCTACCAATTTCATGTTACAGTCCTCCCAAGAAGACGACCATCATGCCCCTAGTTCTCTCTCCCCGATTCTCCCACCTTGCACCACTACTCAAGATTTCAGTGGTGTGGCATCCTTCTTGGGGAAAAGGTCGATGTCTTTCTCGGGCATGAACAACATAGACGGATGCGATCAAGAAGCGAATATGAACGGAGAAGATGATTTGTCGGACGACGGATCGCAGCTTCTTGCCgg...

CDS

Download CDS FASTA

954 bp · LXL04_025193|LXL04_025193|OH1004|CDS

ATGACTTGCGCTGGAATGGCCTTCTTCTCTACCAATTTCATGTTACAGTCCTCCCAAGAAGACGACCATCATGCCCCTAGTTCTCTCTCCCCGATTCTCCCACCTTGCACCACTACTCAAGATTTCAGTGGTGTGGCATCCTTCTTGGGGAAAAGGTCGATGTCTTTCTCGGGCATGAACAACATAGACGGATGCGATCAAGAAGCGAATATGAACGGAGAAGATGATTTGTCGGACGACGGATCGCAGCTTCTTGCCGG...

Protein

Download Protein FASTA

317 aa · LXL04_025193|LXL04_025193|OH1004|PROTEIN

MTCAGMAFFSTNFMLQSSQEDDHHAPSSLSPILPPCTTTQDFSGVASFLGKRSMSFSGMNNIDGCDQEANMNGEDDLSDDGSQLLAGEKKRRLNMEQVKTLERNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFEAVKAENDSLQSQNHKLHAEIMALKNREPTELINLNIKETEGSCSNRSENSSEIKLDISRTPATDSPLSSHQHQQHHQHHQQPIPNLFPSSNIERPNANNNNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025193`
TK1151 ID	TkA06G076040
OH-1004 ID	LXL04_025193
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025193

Location Chr05:107353243-107355460 (+)

Description Similar to ATHB-13: Homeobox-leucine zipper protein ATHB-13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69780`	Probable transcription factor that may act in the sucrose-signaling pathway.	No verified direct reference in this release
`At1g26960`	Probable transcription factor.	No verified direct reference in this release
`At5g15150`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0170600`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2XD08`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025193 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010311 lateral root formation Biological Process

GO:0022622 root system development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0048527 lateral root development Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0048826 cotyledon morphogenesis Biological Process

GO:0080022 primary root development Biological Process

KEGG gene cross-reference

ath:AT1G26960

ath:AT1G69780

ath:AT5G15150

dosa:Os03g0170600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · LXL04_025193 · OH-1004

Cytoplasm0.080

Rank 2 · LXL04_025193 · OH-1004

Cell membrane0.020

Rank 3 · LXL04_025193 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_025193 · OH-1004

Plastid0.010

Rank 5 · LXL04_025193 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00046.36Homeodomain89-142 aa

PF02183.24HALZ144-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025193	`PF00046.36`	Homeodomain	89	142	9e-16	58.2
LXL04_025193	`PF02183.24`	HALZ	144	185	9.9e-17	61.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LC03`	Arabidopsis thaliana	Homeobox-leucine zipper protein ATHB-13	60.185%	Swiss-Prot	strong database homology
`Q8LFD3`	Arabidopsis thaliana	Homeobox-leucine zipper protein ATHB-23	50.779%	Swiss-Prot	strong database homology
`Q00466`	Arabidopsis thaliana	Homeobox-leucine zipper protein HAT7	41.693%	Swiss-Prot	moderate database homology
`Q8S7W9`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein HOX21	55.326%	Swiss-Prot	strong database homology
`A2XD08`	Oryza sativa subsp. indica	Homeobox-leucine zipper protein HOX21	54.983%	Swiss-Prot	strong database homology

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