LXL04_025115 | RubberDandelionOmics

Gene overview

LXL04_025115

Reference: OH-1004 Chr: Chr05 Coordinates: 106292553-106299895 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3669 bp · LXL04_025115|LXL04_025115|OH1004|cDNA

ATGTGTCAAGTTTACCTCTATAAATTTTTACCTACCAATCCTTCCGGTCGAGTCTACGTTGACTTGCTGAAATGGACAAATCCGATTCGAGTGAAGATTGACGCAAATCTATATTTCCACTTGACTTTCTCTTGTGTTCTCATTTGTACTCAACAGGTAAATGTAGGCGGATTCACTTTGATTGTAACCTTATGGGGTTTATCAAGTCTCGAAGGCGTTTGTTCACATGGAGTTCACCCTCTCGCGAGAATTGCCATAGA...

CDS

Download CDS FASTA

3669 bp · LXL04_025115|LXL04_025115|OH1004|CDS

ATGTGTCAAGTTTACCTCTATAAATTTTTACCTACCAATCCTTCCGGTCGAGTCTACGTTGACTTGCTGAAATGGACAAATCCGATTCGAGTGAAGATTGACGCAAATCTATATTTCCACTTGACTTTCTCTTGTGTTCTCATTTGTACTCAACAGGTAAATGTAGGCGGATTCACTTTGATTGTAACCTTATGGGGTTTATCAAGTCTCGAAGGCGTTTGTTCACATGGAGTTCACCCTCTCGCGAGAATTGCCATAGA...

Protein

Download Protein FASTA

1222 aa · LXL04_025115|LXL04_025115|OH1004|PROTEIN

MCQVYLYKFLPTNPSGRVYVDLLKWTNPIRVKIDANLYFHLTFSCVLICTQQVNVGGFTLIVTLWGLSSLEGVCSHGVHPLARIAIENTVLDLNNSASSVKVSPSVLGTGGQSFDWVNVNISNPNPSDNDWIGVFSPSNVSTSTCAPENSEVLAPLLCTAPIKYKYVKDGNPNYKNTGKALLKFRLINQRSDFSLALFTGGLSKPKLVTVSNTIAFSNPNVPNYPRLTQGKLWNQMSVTWTSGYGTREARPFVEWGKKGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025115`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025115

Location Chr05:106292553-106299895 (-)

Description Similar to PAP1: Probable inactive purple acid phosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13750`	Probable inactive purple acid phosphatase 1.	No verified direct reference in this release
`At5g50400`	Probable inactive purple acid phosphatase 27.	No verified direct reference in this release
`At4g24890`	Probable inactive purple acid phosphatase 24.	No verified direct reference in this release
`At2g03450`	Probable inactive purple acid phosphatase 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025115 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G13750

ath:AT4G24890

ath:AT5G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.425

Rank 1 · LXL04_025115 · OH-1004

Lysosome / Vacuole0.204

Rank 2 · LXL04_025115 · OH-1004

Cell membrane0.155

Rank 3 · LXL04_025115 · OH-1004

Cytoplasm0.127

Rank 4 · LXL04_025115 · OH-1004

Endoplasmic reticulum0.086

Rank 5 · LXL04_025115 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17808.8fn3_PAP100-218 aa

PF16656.12Pur_ac_phosph_N224-329 aa

PF00149.34Metallophos341-556 aa

PF14008.12Metallophos_C571-628 aa

PF17808.8fn3_PAP657-774 aa

PF16656.12Pur_ac_phosph_N780-886 aa

PF00149.34Metallophos898-1113 aa

PF14008.12Metallophos_C1138-1197 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025115	`PF17808.8`	fn3_PAP	100	218	5e-82	272.4
LXL04_025115	`PF16656.12`	Pur_ac_phosph_N	224	329	1.6e-24	87.1
LXL04_025115	`PF00149.34`	Metallophos	341	556	1e-34	121.4
LXL04_025115	`PF14008.12`	Metallophos_C	571	628	2.5e-31	108.8
LXL04_025115	`PF17808.8`	fn3_PAP	657	774	5e-82	272.4
LXL04_025115	`PF16656.12`	Pur_ac_phosph_N	780	886	1.6e-24	87.1
LXL04_025115	`PF00149.34`	Metallophos	898	1113	1e-34	121.4
LXL04_025115	`PF14008.12`	Metallophos_C	1138	1197	2.5e-31	108.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LMX4`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 1	73.826%	Swiss-Prot	weak database homology
`Q5MAU8`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 27	69.728%	Swiss-Prot	weak database homology
`Q8H1R2`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 24	66.837%	Swiss-Prot	weak database homology
`Q9ZQ81`	Arabidopsis thaliana	Probable inactive purple acid phosphatase 9	30.808%	Swiss-Prot	weak database homology

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