LXL04_024993 | RubberDandelionOmics

Gene overview

LXL04_024993

Reference: OH-1004 Chr: Chr05 Coordinates: 103602586-103607506 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2238 bp · LXL04_024993|LXL04_024993|OH1004|cDNA

ATGGCGGCACCACCATCGCCACAACTACCGTCACATCTTCATCTCACACATTTTCTCTTATTCCTACTCCTCCTCTTCCACCTTTCTCTACTCCAGGCTACACCACCGGCTAACGACCACCCAGACCTTTCCCCATTGATGTCATTCAAATCTTCCTCCGACGTCTCAAACAAGCTCACTTCCTGGAACTACTCTTCTGATCCATGTAGCAGCTCTTCTGCCTTCTATGGCGTCTCTTGCCTCCACAACCGAGTTACTCG...

CDS

Download CDS FASTA

2238 bp · LXL04_024993|LXL04_024993|OH1004|CDS

ATGGCGGCACCACCATCGCCACAACTACCGTCACATCTTCATCTCACACATTTTCTCTTATTCCTACTCCTCCTCTTCCACCTTTCTCTACTCCAGGCTACACCACCGGCTAACGACCACCCAGACCTTTCCCCATTGATGTCATTCAAATCTTCCTCCGACGTCTCAAACAAGCTCACTTCCTGGAACTACTCTTCTGATCCATGTAGCAGCTCTTCTGCCTTCTATGGCGTCTCTTGCCTCCACAACCGAGTTACTCG...

Protein

Download Protein FASTA

745 aa · LXL04_024993|LXL04_024993|OH1004|PROTEIN

MAAPPSPQLPSHLHLTHFLLFLLLLFHLSLLQATPPANDHPDLSPLMSFKSSSDVSNKLTSWNYSSDPCSSSSAFYGVSCLHNRVTRLVLEDLDLQGRFDSLTSLTQLRILSLKRNRLTGPIPDLSKLPSLKLLFLSYNQISGEFPPSLPSLFGLYRLDLSYNNFSGEIPATINRMKHLLTLRLEENQFSGSIGVLSLQNLEDFNISGNQISGEIPTALSGFPESAFTNNRILCGFPLSNCTDPRIPGLASPVGKPANTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024993`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024993

Location Chr05:103602586-103607506 (-)

Description Similar to At1g68400: Probable leucine-rich repeat receptor-like protein kinase At1g68400

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68400`	Probable leucine-rich repeat receptor-like protein kinase At1g68400.	No verified direct reference in this release
`At2g36570`	Leucine-rich repeat receptor-like protein kinase involved in secondary cell wall formation in xylem fibers.	The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway.2013 · DOI: 10.1186/1471-2229-13-94
`At2g26730`	Probable inactive receptor kinase At2g26730.	No verified direct reference in this release
`At5g58300`	Probable inactive receptor kinase At5g58300.	No verified direct reference in this release
`At3g08680`	Probable inactive receptor kinase At3g08680.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024993 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009898 cytoplasmic side of plasma membrane Cellular Component

GO:0016328 lateral plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G68400

ath:AT2G26730

ath:AT2G36570

ath:AT3G08680

ath:AT5G58300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.863

Rank 1 · LXL04_024993 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_024993 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_024993 · OH-1004

Nucleus0.065

Rank 4 · LXL04_024993 · OH-1004

Golgi apparatus0.020

Rank 5 · LXL04_024993 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_8101-141 aa

PF23598.2LRR_14101-206 aa

PF12799.14LRR_4106-142 aa

PF07714.24PK_Tyr_Ser-Thr383-650 aa

PF00069.32Pkinase383-650 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024993	`PF13855.13`	LRR_8	101	141	1.8e-09	37.9
LXL04_024993	`PF23598.2`	LRR_14	101	206	1.1e-06	28.4
LXL04_024993	`PF12799.14`	LRR_4	106	142	3.9e-10	40.4
LXL04_024993	`PF07714.24`	PK_Tyr_Ser-Thr	383	650	4.6e-33	115.3
LXL04_024993	`PF00069.32`	Pkinase	383	650	1.9e-32	113.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M9C5`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like protein kinase At1g68400	63.278%	Swiss-Prot	strong database homology
`Q9SJQ1`	Arabidopsis thaliana	Leucine-rich repeat receptor-like protein kinase PXC1	44.562%	Swiss-Prot	moderate database homology
`O48788`	Arabidopsis thaliana	Probable inactive receptor kinase At2g26730	44.874%	Swiss-Prot	moderate database homology
`Q9LVM0`	Arabidopsis thaliana	Probable inactive receptor kinase At5g58300	43.030%	Swiss-Prot	moderate database homology
`Q9C9Y8`	Arabidopsis thaliana	Probable inactive receptor kinase At3g08680	42.563%	Swiss-Prot	moderate database homology

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