LXL04_024895 | RubberDandelionOmics

Gene overview

LXL04_024895

Reference: OH-1004 Chr: Chr05 Coordinates: 101671567-101672959 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1329 bp · LXL04_024895|LXL04_024895|OH1004|cDNA

ATGGCCGACATTAATGGAAACGGTAAGCTTCACATTGCAATGCTCCCATGGCAGGCCTTTGGTCACATTATTCCATTTCTTGAACTAGCAAAACTCATGGCCGCCAAAGGCCATAAGATTTCATTCATTTCAACTCCTCGAAACATCCACCGCCTTCCTCAAATCCCATCAAACTTAACCCCTTTCATAAACCTCATCAAAATTGAGCTACCAAAAGTTCAAAATCTCCCACAAAACGCCGAATCCACAAAAGATTTACC...

CDS

Download CDS FASTA

1329 bp · LXL04_024895|LXL04_024895|OH1004|CDS

ATGGCCGACATTAATGGAAACGGTAAGCTTCACATTGCAATGCTCCCATGGCAGGCCTTTGGTCACATTATTCCATTTCTTGAACTAGCAAAACTCATGGCCGCCAAAGGCCATAAGATTTCATTCATTTCAACTCCTCGAAACATCCACCGCCTTCCTCAAATCCCATCAAACTTAACCCCTTTCATAAACCTCATCAAAATTGAGCTACCAAAAGTTCAAAATCTCCCACAAAACGCCGAATCCACAAAAGATTTACC...

Protein

Download Protein FASTA

442 aa · LXL04_024895|LXL04_024895|OH1004|PROTEIN

MADINGNGKLHIAMLPWQAFGHIIPFLELAKLMAAKGHKISFISTPRNIHRLPQIPSNLTPFINLIKIELPKVQNLPQNAESTKDLPFNKVKYLKIASDGLKKPITDFLKTSSPDWFICDFCTYWLGPIAAEHGVLTAYFSVFPAAVLCLAGPAEVLMYGDNEKPVGQRFMNRARWVPFETEVKPSLFQITRSLQDLTGDEENINDGYRLGATVQGCDAVIVRSSYDFEPEWLNLLKIIYRKPIIPSGLLPAEVADDHAC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024895`
TK1151 ID	TkA06G097440
OH-1004 ID	LXL04_024895
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.100
Protein coverage (%)	TK1151 100.000 / OH-1004 97.059 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024895

Location Chr05:101671567-101672959 (+)

Description Similar to UGT91A1: UDP-glycosyltransferase 91A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22590`	UDP-glycosyltransferase 91A1.	No verified direct reference in this release
`At5g49690`	UDP-glycosyltransferase 91C1.	No verified direct reference in this release
`At5g65550`	UDP-glycosyltransferase 91B1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024895 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G22590

ath:AT5G49690

ath:AT5G65550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.783

Rank 1 · LXL04_024895 · OH-1004

Nucleus0.218

Rank 2 · LXL04_024895 · OH-1004

Endoplasmic reticulum0.067

Rank 3 · LXL04_024895 · OH-1004

Peroxisome0.063

Rank 4 · LXL04_024895 · OH-1004

Plastid0.045

Rank 5 · LXL04_024895 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940V3`	Arabidopsis thaliana	UDP-glycosyltransferase 91A1	45.806%	Swiss-Prot	moderate database homology
`Q9LTA3`	Arabidopsis thaliana	UDP-glycosyltransferase 91C1	42.291%	Swiss-Prot	moderate database homology
`Q9LSM0`	Arabidopsis thaliana	UDP-glycosyltransferase 91B1	41.290%	Swiss-Prot	moderate database homology

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