LXL04_024870 | RubberDandelionOmics

Gene overview

LXL04_024870

Reference: OH-1004 Chr: Chr05 Coordinates: 101150689-101151492 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

612 bp · LXL04_024870|LXL04_024870|OH1004|cDNA

atgtATGTGGATGATATTATAATAATAATCAAAGCTAATACCTGCAAATATGACAGGGGTGACAACAGGAGATACCTAGCACCAGAATATTCGACTACAGGTCATCTGTCATCTAAGGCTGATGTTTTTAGTTTCGGTGTTCTGATTTTTGAAATCGTAAGTGGGTATAGAATATTTGACTATGTGCCCGCCAACAACATGTCCATATTAGAAGAAgttTCCAGTTATTGGTTGGAAGGAAGGTGTTCAGATATAATTGA...

CDS

Download CDS FASTA

612 bp · LXL04_024870|LXL04_024870|OH1004|CDS

ATGTATGTGGATGATATTATAATAATAATCAAAGCTAATACCTGCAAATATGACAGGGGTGACAACAGGAGATACCTAGCACCAGAATATTCGACTACAGGTCATCTGTCATCTAAGGCTGATGTTTTTAGTTTCGGTGTTCTGATTTTTGAAATCGTAAGTGGGTATAGAATATTTGACTATGTGCCCGCCAACAACATGTCCATATTAGAAGAAGTTTCCAGTTATTGGTTGGAAGGAAGGTGTTCAGATATAATTGA...

Protein

Download Protein FASTA

203 aa · LXL04_024870|LXL04_024870|OH1004|PROTEIN

MYVDDIIIIIKANTCKYDRGDNRRYLAPEYSTTGHLSSKADVFSFGVLIFEIVSGYRIFDYVPANNMSILEEVSSYWLEGRCSDIIDSRIRADSSIITTFIHIGLLCVQLYQADRPTMEEVVGMLTDSSSRTLPVPKIYLSHWMLEEYKVRTNVVRTNVVHTDTVYTDTSYTDLAYTAYLDQLLADDYDHGAVLDFISELDPR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024870`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024870

Location Chr05:101150689-101151492 (-)

Description Similar to At4g00960: Putative receptor-like protein kinase At4g00960

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23250`	Cysteine-rich receptor-like protein kinase 17.	No verified direct reference in this release
`At4g00960`	Cysteine-rich receptor-like protein kinase 44.	No verified direct reference in this release
`At4g23260`	Cysteine-rich receptor-like protein kinase 18.	No verified direct reference in this release
`At1g61370`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370.	No verified direct reference in this release
`At4g11470`	Putative cysteine-rich receptor-like protein kinase 31.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024870 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G61370

ath:AT4G00960

ath:AT4G11470

ath:AT4G23250

ath:AT4G23260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · LXL04_024870 · OH-1004

Nucleus0.301

Rank 2 · LXL04_024870 · OH-1004

Cell membrane0.223

Rank 3 · LXL04_024870 · OH-1004

Lysosome / Vacuole0.079

Rank 4 · LXL04_024870 · OH-1004

Endoplasmic reticulum0.064

Rank 5 · LXL04_024870 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr22-123 aa

PF00069.32Pkinase22-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024870	`PF07714.24`	PK_Tyr_Ser-Thr	22	123	2.9e-08	34.1
LXL04_024870	`PF00069.32`	Pkinase	22	122	3.6e-08	33.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L710`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 17	42.735%	Swiss-Prot	moderate database homology
`O23082`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 44	44.444%	Swiss-Prot	moderate database homology
`Q8RX80`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 18	43.966%	Swiss-Prot	moderate database homology
`O64783`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370	37.931%	Swiss-Prot	moderate database homology
`Q9LDM5`	Arabidopsis thaliana	Putative cysteine-rich receptor-like protein kinase 31	43.590%	Swiss-Prot	moderate database homology

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