LXL04_024791 | RubberDandelionOmics

Gene overview

LXL04_024791

Reference: OH-1004 Chr: Chr05 Coordinates: 99034412-99035084 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

585 bp · LXL04_024791|LXL04_024791|OH1004|cDNA

ATGATGATGATGCAGATGGAAATGGCTTCTTCTTCTCTAgatcaagaaaagaagatcgGGATCATGGGCTATGAAGATCACGACGATGATTCGTTTTCTTCTGATGCATCGAGTATTGTGTCTTCAGATGATGAATCGGAATCCGATGATGCCTTTGAAGAAAGCAATTCTTCTTCCGGCAGCTCTCCGTCGTCGAACGACGATCACCGGAGTACTGCTTTAGGAGACATGTCCGATCTTCTTCACCAACTTCCCTCCAA...

CDS

Download CDS FASTA

585 bp · LXL04_024791|LXL04_024791|OH1004|CDS

ATGATGATGATGCAGATGGAAATGGCTTCTTCTTCTCTAGATCAAGAAAAGAAGATCGGGATCATGGGCTATGAAGATCACGACGATGATTCGTTTTCTTCTGATGCATCGAGTATTGTGTCTTCAGATGATGAATCGGAATCCGATGATGCCTTTGAAGAAAGCAATTCTTCTTCCGGCAGCTCTCCGTCGTCGAACGACGATCACCGGAGTACTGCTTTAGGAGACATGTCCGATCTTCTTCACCAACTTCCCTCCAA...

Protein

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194 aa · LXL04_024791|LXL04_024791|OH1004|PROTEIN

MMMMQMEMASSSLDQEKKIGIMGYEDHDDDSFSSDASSIVSSDDESESDDAFEESNSSSGSSPSSNDDHRSTALGDMSDLLHQLPSKRGLSKHFQGKSQSFTSLAQVMCLEDLAKPENPYNKKLKSCKSYVGLSKVLPPPTRSTSSSKLFNKKPSSRASCSSLSIGRNGSYLGLNNSSRPPSHPSHCNGGTSAF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024791`
TK1151 ID	TkA06G108420
OH-1004 ID	LXL04_024791
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024791

Location Chr05:99034412-99035084 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03170`	Promotes slightly the tolerance to oxidizing chemicals (e.g. diamide).	No verified direct reference in this release
`At5g56550`	Promotes the tolerance to a range of metals, including cadmium (Cd), arsenic (As) and copper (Cu) and to oxidizing chemicals (e.g. diamide and tert-butyl hydroperoxide (t-BOOH)).	OXIDATIVE STRESS 3 is a chromatin-associated factor involved in tolerance to heavy metals and oxidative stress.2009 · DOI: 10.1111/j.1365-313x.2008.03717.x OXIDATIVE STRESS 3 regulates drought-induced flowering through APETALA 1.2019 · DOI: 10.1016/j.bbrc.2019.08.154
`At5g24890`	Transcription activator which may regulates gene expression through interaction with the histone deacetylase HDA19 (By similarity).	No verified direct reference in this release
`At5g21940`	Promotes slightly the tolerance to zinc (Zn) and to oxidizing chemicals (e.g. diamide).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024791 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0010043 response to zinc ion Biological Process

GO:0010114 response to red light Biological Process

GO:0010218 response to far red light Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0046688 response to copper ion Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:2000070 regulation of response to water deprivation Biological Process

KEGG gene cross-reference

ath:AT3G03170

ath:AT5G21940

ath:AT5G24890

ath:AT5G56550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.588

Rank 1 · LXL04_024791 · OH-1004

Cytoplasm0.426

Rank 2 · LXL04_024791 · OH-1004

Cell membrane0.112

Rank 3 · LXL04_024791 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_024791 · OH-1004

Plastid0.031

Rank 5 · LXL04_024791 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30470.1OXS33-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024791	`PF30470.1`	OXS3	3	185	4.7e-15	56.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q29PZ2`	Arabidopsis thaliana	Protein OXIDATIVE STRESS 3 LIKE 3	72.973%	Swiss-Prot	weak database homology
`Q9LVB9`	Arabidopsis thaliana	Protein OXIDATIVE STRESS 3	46.316%	Swiss-Prot	weak database homology
`Q8L9W8`	Arabidopsis thaliana	Protein OXIDATIVE STRESS 3 LIKE 4	49.123%	Swiss-Prot	weak database homology
`Q9C593`	Arabidopsis thaliana	Protein OXIDATIVE STRESS 3 LIKE 1	33.333%	Swiss-Prot	weak database homology

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