LXL04_024711 | RubberDandelionOmics

Gene overview

LXL04_024711

Reference: OH-1004 Chr: Chr05 Coordinates: 97272682-97275295 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1428 bp · LXL04_024711|LXL04_024711|OH1004|cDNA

ATGCTAATCTCACTGCCCGCTTTCCAATCCTCATTGAAACTCCTTAACCACCATGAGAAACCACCATTCAAACTCCCTTCAAGATTCTCCATAACAAATTCCCAGAATCCCGATTGCCAGTTTTCAACATTTTTTCAGGCAAACCAGAGTAGTGTTGCAGCAGTGGTGTTTGGGGAAGCGTCAACACGGTCAAGATTGTATCCATTGACCAAAAGAAGATCAGAAGGTGCAATTCCGATTGCAGGAAGTTATAGGCTTAT...

CDS

Download CDS FASTA

1428 bp · LXL04_024711|LXL04_024711|OH1004|CDS

ATGCTAATCTCACTGCCCGCTTTCCAATCCTCATTGAAACTCCTTAACCACCATGAGAAACCACCATTCAAACTCCCTTCAAGATTCTCCATAACAAATTCCCAGAATCCCGATTGCCAGTTTTCAACATTTTTTCAGGCAAACCAGAGTAGTGTTGCAGCAGTGGTGTTTGGGGAAGCGTCAACACGGTCAAGATTGTATCCATTGACCAAAAGAAGATCAGAAGGTGCAATTCCGATTGCAGGAAGTTATAGGCTTAT...

Protein

Download Protein FASTA

475 aa · LXL04_024711|LXL04_024711|OH1004|PROTEIN

MLISLPAFQSSLKLLNHHEKPPFKLPSRFSITNSQNPDCQFSTFFQANQSSVAAVVFGEASTRSRLYPLTKRRSEGAIPIAGSYRLIDAVISNCINSNITKIYALTQFNSTSLNSHLLRAYSGGLLANQEFLEVIAAYQSPEDNGWFQGTADAMRRCLWVLEKHPALEFLVLPGHHLYKMDYQKLLEEHRNNKADITVAVLDNMRDHKTGFGSFKIDINDRVIGFREEQELFMPSSVHGSKFNNDDKFSSMGIYVMNRHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024711`
TK1151 ID	TkA06G115670
OH-1004 ID	LXL04_024711
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_024711

Location Chr05:97272682-97275295 (-)

Description Similar to APS2: Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g05610`	Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic.	No verified direct reference in this release
`At5g48300`	This protein plays a role in synthesis of starch.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_024711 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005978 glycogen biosynthetic process Biological Process

GO:0019252 starch biosynthetic process Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0009501 amyloplast Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0010170 glucose-1-phosphate adenylyltransferase complex Cellular Component

GO:0030931 heterotetrameric ADPG pyrophosphorylase complex Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008878 glucose-1-phosphate adenylyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05610

ath:AT5G48300

bna:106366674

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.914

Rank 1 · LXL04_024711 · OH-1004

Mitochondrion0.081

Rank 2 · LXL04_024711 · OH-1004

Cytoplasm0.073

Rank 3 · LXL04_024711 · OH-1004

Peroxisome0.042

Rank 4 · LXL04_024711 · OH-1004

Nucleus0.038

Rank 5 · LXL04_024711 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00483.30NTP_transferase64-317 aa

PF25247.2LbH_GLGC337-474 aa

PF24894.2Hexapep_GlmU347-389 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024711	`PF00483.30`	NTP_transferase	64	317	4.6e-40	138.4
LXL04_024711	`PF25247.2`	LbH_GLGC	337	474	2.6e-45	154.4
LXL04_024711	`PF24894.2`	Hexapep_GlmU	347	389	1.2e-08	35.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4I8U2`	Arabidopsis thaliana	Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic	56.290%	Swiss-Prot	strong database homology
`P55228`	Arabidopsis thaliana	Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic	49.453%	Swiss-Prot	moderate database homology

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