Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1425 bp · LXL04_024698|LXL04_024698|OH1004|cDNA
ATGGGCGACACCATCACTTCCCTCCCATCAGGCCTCCTACCCGACGAGGCCTCACCAGACTGGCTAAACAAGGGCGACAACACCTGGCAGCTCACAGCCGCCGCCATGGTCGGACTTCAAAGCGTCCCTGGCCTTGTCATCCTTTACGGCAGCATGGTGAAGAAGAAATGGGCGGTGAACTCAGCCTTCATGGCGTTATATGCCTTCGCCGCCGTTCTAATATGTTGGGTCATGTGGGCCCACCAACTTTCCTTTGGCGA...
1425 bp · LXL04_024698|LXL04_024698|OH1004|CDS
ATGGGCGACACCATCACTTCCCTCCCATCAGGCCTCCTACCCGACGAGGCCTCACCAGACTGGCTAAACAAGGGCGACAACACCTGGCAGCTCACAGCCGCCGCCATGGTCGGACTTCAAAGCGTCCCTGGCCTTGTCATCCTTTACGGCAGCATGGTGAAGAAGAAATGGGCGGTGAACTCAGCCTTCATGGCGTTATATGCCTTCGCCGCCGTTCTAATATGTTGGGTCATGTGGGCCCACCAACTTTCCTTTGGCGA...
Protein
Download Protein FASTA474 aa · LXL04_024698|LXL04_024698|OH1004|PROTEIN
MGDTITSLPSGLLPDEASPDWLNKGDNTWQLTAAAMVGLQSVPGLVILYGSMVKKKWAVNSAFMALYAFAAVLICWVMWAHQLSFGDKLMGIMGKPNIAVTQKYLLEKQYNKMIPAADYVFYQFAFAAITVILLGGSLLGRMNFYAWMLFVPLWLTFSYTVGAYTIWDKGFLSQHIIDFSGGYVIHLSSGVAGFTAAYWVGPRHPSDREHFPPNNIIHMMAGAGFLWMGWSGFNGGSPLAANEITALAVLNTHICTATSL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024698 |
|---|---|
| TK1151 ID | TkA06G117000 |
| OH-1004 ID | LXL04_024698 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 95.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 70.253Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024698 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:96840776-96842275 (-) | |||||||||
| Description | Similar to AMT2-3: Ammonium transporter 2 member 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009610 response to symbiotic fungus Biological Process GO:0036377 arbuscular mycorrhizal association Biological Process GO:0072488 ammonium transmembrane transport Biological Process GO:0005886 plasma membrane Cellular Component GO:0085042 periarbuscular membrane Cellular Component GO:0008519 ammonium channel activity Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os01g0870300 dosa:Os02g0550800 mtr:11423183 mtr:11444316 mtr:25482762 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00909.27Ammonium_transp29-448 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024698 | PF00909.27 | Ammonium_transp | 29 | 448 | 1.1e-80 | 272.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.