LXL04_024550 | RubberDandelionOmics

Gene overview

LXL04_024550

Reference: OH-1004 Chr: Chr05 Coordinates: 93615093-93616559 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

975 bp · LXL04_024550|LXL04_024550|OH1004|cDNA

atgTACGACGTTTTAATAAATGGACTTGCCGGCGCCGGTGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTCCAAACTGTAAACACGAGTCAACAAACCGATAGAGATccgaagaaagagaagaaaaagGCGGGGACAGTTGAACAGATAATCCTCTTGCTTAATTTTCAACATAATTTTAAATCTTCTTCGTCGTCGAAGAGCTGTAGTAGTGTTGGTGGACGCTTCTGGTGCTCTCTGTGGTGGTGGGCGAAGCT...

CDS

Download CDS FASTA

975 bp · LXL04_024550|LXL04_024550|OH1004|CDS

ATGTACGACGTTTTAATAAATGGACTTGCCGGCGCCGGTGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTCCAAACTGTAAACACGAGTCAACAAACCGATAGAGATCCGAAGAAAGAGAAGAAAAAGGCGGGGACAGTTGAACAGATAATCCTCTTGCTTAATTTTCAACATAATTTTAAATCTTCTTCGTCGTCGAAGAGCTGTAGTAGTGTTGGTGGACGCTTCTGGTGCTCTCTGTGGTGGTGGGCGAAGCT...

Protein

Download Protein FASTA

324 aa · LXL04_024550|LXL04_024550|OH1004|PROTEIN

MYDVLINGLAGAGGGIIAQLLTYPLQTVNTSQQTDRDPKKEKKKAGTVEQIILLLNFQHNFKSSSSSKSCSSVGGRFWCSLWWWAKLLLVFVFLAVLGVCFFLWIGPFLMNKEVIPILNWETETFSTPVLAILIFTSVALFPTILLPSTPSMWVAGMSFGYSFGFLLIITGVIIGTSLPYFIGSLFYHKIQGWLERYPKKASILKPAGEGNWFNQFRAVALLRISPFPYMVYNYCAVATDVKFGPYLFRTLTGMVPEIFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_024550`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_024550

Location Chr05:93615093-93616559 (-)

Description Similar to slr0305: TVP38/TMEM64 family membrane protein slr0305 (Synechocystis sp. (strain PCC 6803 / Kazusa)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39970`	May mediate NAD⁺ import into peroxisomes.	A peroxisomal carrier delivers NAD⁺ and contributes to optimal fatty acid degradation during storage oil mobilization.2012 · DOI: 10.1111/j.1365-313x.2011.04775.x A defect of peroxisomal membrane protein 38 causes enlargement of peroxisomes.2011 · DOI: 10.1093/pcp/pcr147 The peroxisomal NAD+ carrier of Arabidopsis thaliana transports coenzyme A and its derivatives.2012 · DOI: 10.1007/s10863-012-9445-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024550 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0043132 NAD transport Biological Process

GO:0043462 regulation of ATP-dependent activity Biological Process

GO:0044375 regulation of peroxisome size Biological Process

GO:0051480 regulation of cytosolic calcium ion concentration Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005778 peroxisomal membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G39970

hsa:169200

mmu:100201

syn:slr0305

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.311

Rank 1 · LXL04_024550 · OH-1004

Lysosome / Vacuole0.248

Rank 2 · LXL04_024550 · OH-1004

Cell membrane0.236

Rank 3 · LXL04_024550 · OH-1004

Golgi apparatus0.134

Rank 4 · LXL04_024550 · OH-1004

Cytoplasm0.112

Rank 5 · LXL04_024550 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153.33Mito_carr5-47 aa

PF09335.17VTT_dom146-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_024550	`PF00153.33`	Mito_carr	5	47	8e-06	26.2
LXL04_024550	`PF09335.17`	VTT_dom	146	266	7.3e-16	59.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04200`	Arabidopsis thaliana	Peroxisomal nicotinamide adenine dinucleotide carrier	78.431%	Swiss-Prot	weak database homology

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