Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1728 bp · LXL04_024424|LXL04_024424|OH1004|cDNA
ATGTTGTCAGCAAAAGTCACATGCAACTCTCACGGCCAAGATTCATCGTATTTCCTGGGATGGGAAGAGTACGAGAAGAATCCGTACGACGATATCAACAATCCCAACGGTATAATCCAAATGGGTCTCGCCGAGAATCAACTCTCCTTCGACCTTCTTGAATCATGGCTCCAAAAAAACCCAGAACCATTAGCTTTCAAGAAACATAACAATCAATCCACCTTTAAAGACCTTGCTCTCTTTCAAGATTACCACGGCCT...
1728 bp · LXL04_024424|LXL04_024424|OH1004|CDS
ATGTTGTCAGCAAAAGTCACATGCAACTCTCACGGCCAAGATTCATCGTATTTCCTGGGATGGGAAGAGTACGAGAAGAATCCGTACGACGATATCAACAATCCCAACGGTATAATCCAAATGGGTCTCGCCGAGAATCAACTCTCCTTCGACCTTCTTGAATCATGGCTCCAAAAAAACCCAGAACCATTAGCTTTCAAGAAACATAACAATCAATCCACCTTTAAAGACCTTGCTCTCTTTCAAGATTACCACGGCCT...
Protein
Download Protein FASTA575 aa · LXL04_024424|LXL04_024424|OH1004|PROTEIN
MLSAKVTCNSHGQDSSYFLGWEEYEKNPYDDINNPNGIIQMGLAENQLSFDLLESWLQKNPEPLAFKKHNNQSTFKDLALFQDYHGLPAFKNALVRFMSEIRGNTVSFDPNNLVLTAGATSANETLMFCLADPGDAILIPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFKITKPALEDAYKQAEKQNLKVKGVLVTNPSNPLGTSLSLHELDLLVNFITTKNIHLISDEIYSGTVFSYPCFTSIMEVLKNRNLMNTEIA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024424 |
|---|---|
| TK1151 ID | TkA06G145350 |
| OH-1004 ID | LXL04_024424 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 99.788 / OH-1004 81.739Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024424 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:90199026-90202236 (+) | |||||||||
| Description | Similar to ACS3: 1-aminocyclopropane-1-carboxylate synthase 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006417 regulation of translation Biological Process GO:0006520 amino acid metabolic process Biological Process GO:0009693 ethylene biosynthetic process Biological Process GO:0009835 fruit ripening Biological Process GO:0005737 cytoplasm Cellular Component GO:0008483 transaminase activity Molecular Function GO:0016491 oxidoreductase activity Molecular Function GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity Molecular Function GO:0030170 pyridoxal phosphate binding Molecular Function GO:0042802 identical protein binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G49700 ath:AT4G37770 sly:778292 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00155.28Aminotran_1_239-423 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024424 | PF00155.28 | Aminotran_1_2 | 39 | 423 | 1.6e-105 | 354.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.